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CSDB_GT, a curated glycosyltransferase database with close-to-full coverage on three most studied non-animal species
Glycobiology. 2021. Vol. 31. No. 5. P. 524-529.
We report the accomplishment of the first stage of the development of a novel manually curated database on glycosyltransferase (GT) activities, CSDB_GT. CSDB_GT (http://csdb.glycoscience.ru/gt.html) has been supplemented with GT activities from Saccharomyces cerevisiae. Now it provides the close-to-complete coverage on experimentally confirmed GTs from the three most studied model organisms from the three kingdoms: Plantae (Arabidopsis thaliana, ca. 930 activities), Bacteria (Escherichia coli, ca. 820 activities), and Fungi (S. cerevisiae, ca. 270 activities).
Philip V Toukach, Scherbinina S. I., Frank M., Glycobiology 2022 Vol. 32 No. 6 P. 460-468
Population analysis in terms of glycosidic torsion angles is frequently used to reveal preferred conformers of glycans. However, due to high structural diversity and flexibility of carbohydrates, conformational characterization of complex glycans can be a challenging task. Herein we present a conformation module of oligosaccharide fragments occurring in natural glycan structures developed on the platform ...
Added: October 24, 2022
Toukach PV, Egorova K. S., Scientific data 2022 Vol. 9 Article 131
The Carbohydrate Structure Database (CSDB, http://csdb.glycoscience.ru/) is a free curated depository storing various data on glycans of bacterial, fungal and plant origins. Currently, it maintains a close-to-full coverage on bacterial and fungal carbohydrates up to the year 2020. The CSDB web-interface provides free access to the database content and dedicated tools. Still, the number of ...
Added: June 8, 2022
Toukach Ph., Egorova K., Journal of Chemical Information and Modeling 2020 Vol. 60 No. 3 P. 1276-1289
The CSDB Linear notation for carbohydrate sequences utilized in the Carbohydrate Structure Database (CSDB) has been improved to meet modern requirements in glycoinformatics. The new features include the possibility to combine repeating and non-repeating moieties in one structure; support of carbon-carbon bonds; and usage of SMILES encodings for unambiguous chemical description of glycan structures, including ...
Added: October 14, 2021
Yampolsky S., Наукоемкие технологии в космических исследованиях Земли 2019 Т. 11 № 5 С. 57-64
This article addresses the particularities of military management bodies functioning automation and problems which prevent the application of an intelligent system, and the article also contains the structure of an intelligent system and offers the scheme of its application for informational and analytical maintenance for the activities of military management bodies.The possible application of an ...
Added: January 12, 2020
Тарасенко И. Д., Дударев В.А., Вестник Казанского технологического университета 2014 Т. 17 № 19 С. 381-382
Problem of authorized access to information resources on inorganic substances and materials properties is traditionally solved by means of individual authorization systems development. At the same time the number of materials science resources increases for chemists information service. At IMET RAS there are several information systems with proprietary authorization systems, that makes them hard to ...
Added: January 20, 2016
Киселева Н. Н., Дударев В.А., Столяренко А. В., Вестник Казанского технологического университета 2014 Т. 17 № 19 С. 372-376
Integrated system (IS) of databases (DB) on the properties of inorganic substances and materials that includes DBs developed by Baikov Institute (Russia) and NIMS (Japan) was created. The service-oriented architecture on the basis of Web-services application for support of interaction between heterogeneous information systems was used for DBs integrations. The special metabase is used for ...
Added: January 20, 2016
Baulin E., Victor Yacovlev, Khachko D. et al., Database: the journal of biological databases and curation 2016
The Universe of RNA Structures DataBase (URSDB) stores information obtained from all RNA-containing PDB entries (2935 entries in October 2015). The content of the database is updated regularly. The database consists of 51 tables containing indexed data on various elements of the RNA structures. The database provides a web interface allowing user to select a ...
Added: October 28, 2016
Mamay E., International Journal of Open Information Technologies 2022 Т. 10 № 11 С. 87-104
The article discusses the use of digital technologies in law enforcement through the prism of the balance of public and private interests. The author analyses the system of legal regulation, studies the normative legal acts regulating digital relations and the use of information and communication technologies. Empirical ground of the study constitutes of more than ...
Added: November 3, 2022
Gagarina D., Kornienko S., Поврозник Н. Г., Электронный научно-образовательный журнал "История" 2016 Т. 7 № 51 С. 1-12
History-oriented systems are becoming more and more important element of the information environment of historical science and education. The article deals with the status and trends of history-oriented systems on the level of concepts, development approaches, content, sources, and other parameters. Several types of systems are characterized. Special attention is paid to the research potential ...
Added: August 12, 2018
Karpova I. P., Информационные технологии 2018 Т. 24 № 3 С. 194-201
This paper discusses a problem of distributed data processing in mobile robot’s group. The robot’s group is typified as a static swarm. Static swarm is a model, which is characterized by the absence of a control сenter and is represented by the network with fixed topology at some time interval which consists of locally interacting ...
Added: February 8, 2018
Zakharov V., Варновский Н. П., Шокуров А. В., Вестник Московского университета. Серия 15: Вычислительная математика и кибернетика 2017 № 1 С. 38-44
We study some simple models of confidential databases in cloud computing systems. In the framework of these models we introduce a concept of deductive security for queries to such databases, find necessary and sufficient conditions of deductive security, and describe some classes of queries which satisfy these requirements. ...
Added: October 13, 2016
Bochkov A., Toukach Ph., Journal of Chemical Information and Modeling 2021 Vol. 61 No. 10 P. 4940-4948
This article describes features, usage, and application of an CSDB/SNFG Structure Editor, a new online tool for quick and intuitive input of carbohydrate and derivative structures using Symbol Nomenclature for Glycans (SNFG). The Editor is built on a platform of the Carbohydrate Structure Database (CSDB) and relies on its online services via the dedicated web-API. ...
Added: October 14, 2021
Zakharov V., Varnovsky N. P., Shokurov A. V., Moscow University Computational Mathematics and Cybernetics 2017 Vol. 41 No. 1 P. 60-70
We study some simple models of confidential databases in cloud computing systems. In the framework of these models we introduce a concept of deductive security for queries to such databases, find necessary and sufficient conditions of deductive security, and describe some classes of queries which satisfy these requirements. ...
Added: October 13, 2016
М. : Издательский дом "Типография" Россельхозакадемии, 2014
Vserossiyskaya nauchnaya konferentsiya 31 yanvarya 2014 g. "Matematika, informatika, estestvoznanie v ekonomike i v obshchestve". ...
Added: February 7, 2014
Kasatkina A., Этнография 2019 № 1 С. 139-160
The paper continues a series of preliminary notes for the digital catalogue of collections brought by German ethnologist Albert Grubauer in 1911 from ex British North Borneo (now state Sabah, Malaysia) and sold to the MAE in 1914. The author completes the work started by her predecessors in the museum on identification of two objects ...
Added: December 8, 2021
Novikov R., Armeev G., Gribkova A. et al., Microscopy and Microanalysis 2020 Vol. 26 No. S2 P. 310-311
At the center of the modern CRISPR/Cas genome editing revolution is the engineered ribonucleoprotein complex of the Cas9 protein with sgRNA that is able to bind and cleave DNA at specific loci. The targeted activity is conferred by the ability of the complex to bind to the DNA regions which are complementary to the parts ...
Added: September 14, 2021
И. А. Хромов, Л. С. Восков, Информационные технологии (Российская Федерация) 2022 Т. 28 № 11 С. 570-579
Wireless body area network (WBAN) provides energy-efficient data transfer between wearable devices. Traditional WBAN consists of large and high-power consumption devices. Intrabody communication (IBC) is one of the technologies used by WBAN. IBC transmits data within the human body, consisting of different tissues. When developing devices for WBAN, modeling is necessary due to the signal ...
Added: February 1, 2023
Korotayev A., Вестник Института экономики Российской академии наук 2015 № 1 С. 149-162
The 19th century saw an explosive growth of the gap between the “First” and the “Third” World as regards per capita incomes and levels of life that has become to be known as the “Great Divergence”. In the 20th century the Great Divergence continued up to the early 1970s, and then – in the late ...
Added: December 3, 2015
Kalyatin V., Патенты и лицензии. Интеллектуальные права 2023 № 6 С. 49-56
The processing of the works often causes conflicts of authors. But it is even more difficult to resolve processing issues regarding databases due to the specifics of the object. Article of V.O.Kalyatin, PhD, associate professor, prof. Research Center for Private Law named after S.S.Alekseev under the President of the Russian Federation, Associate Professor of the ...
Added: June 12, 2023
Боброва Е. В., Решетникова В. В., Volkova K. et al., Журнал высшей нервной деятельности им. И.П. Павлова 2017 Т. 67 № 4 С. 485-492
Исследовали обучение управлению системой “Интерфейс мозг-компьютер” (ИМК) с помощью специально разработанного тренинга. Тренинг включал осуществление медленных циклических движений правой и левой рукой (длительность каждого движения соответствовала длительности представлений движений руки при работе с ИМК), представление этих движений, а также спокойное сидение до начала движений. До проведения тренинга и после него осуществлялось управление ИМК. По тесту ...
Added: October 20, 2017
Babich O., Larina V., Krol O. et al., Pharmaceutics 2023 Vol. 15 No. 2 Article 616
Tanacetum vulgare is an herbaceous plant widely used in folk medicine. It is rich in phenolic acids and flavonoids, which have pharmacological and medicinal properties, such as anthelmintic, antispasmodic, tonic, antidiabetic, diuretic, and antihypertensive. This study aimed to confirm the presence of biologically active substances in Tanacetum vulgare and to determine the pharmacological spectrum of ...
Added: February 1, 2024
Derkach K., Maxim A. Gureev, Babushkina A. et al., International Journal of Molecular Sciences 2023 Vol. 24 No. 5 Article 4498
Dual inhibitors of protein phosphotyrosine phosphatase 1B (PTP1B)/T-cell protein phosphotyrosine phosphatase (TC-PTP) based on the 3-(hydroxymethyl)-4-oxo-1,4-dihydrocinnoline scaffold have been identified. Their dual affinity to both enzymes has been thoroughly corroborated by in silico modeling experiments. The compounds have been profiled in vivo for their effects on body weight and food intake in obese rats. Likewise, ...
Added: February 1, 2024
Kiselyova N. N., Dudarev V.A., Korzhuev M. A., Inorganic Materials: Applied Research 2016 Vol. 7 No. 1 P. 34-39
A database (DB) on the bandgap of inorganic substances available via the Internet (http://bg.imetdb.ru) was developed for the information service of specialists in the sphere of inorganic chemistry and materials science. The DB is integrated with other information systems on the properties of inorganic substances and materials, which provides the search of a wide range ...
Added: February 23, 2016
Abylkalikov S., Демографическое обозрение 2018 Т. 5 № 4 С. 150-164
This paper investigates the use of the United Nations World Population Policies Database for research on internal migration policy. Internal migration is more extensive and, perhaps, even more significant for the economic, political, social and cultural development of society than international migration. Internal migration policy is not always singled out as an independent factor, but ...
Added: January 21, 2019