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Statistical Potential to Improve Antibody-Antigen Docking
P. 646-651.
Sadovnikov A., Ermak T., Yakovlev P.
In this paper, we describe the development of a novel statistical potential for the prediction of antibody-antigen complexes (docking), which play key role in in silico immunotherapy discovery. The developed statistical potential is then used to improve the accuracy of an existing docking algorithm. We also present a new dataset for the development and comparison of different statistical potentials and docking algorithms. One of the key features of the developed dataset is that it can be obtained almost automatically, with few optional manual steps, using the pipeline introduced in this paper.
Безруков В. А., В кн. : Языки в современном мире: материалы VIII международной конференции. : М. : КДУ, 2009. С. 111-117.
Added: December 14, 2014
Batagelj V., PRAPROTNIK S., Social Network Analysis and Mining 2016 Vol. 6 No. 1 P. 1-22
n a temporal network, the presence and activity of nodes and links can change through time. To describe temporal networks we introduce the notion of temporal quantities. We define the addition and multiplication of temporal quantities in a way that can be used for the definition of addition and multiplication of temporal networks. The corresponding ...
Added: November 1, 2018
Голяев Ю. Д., Иванов М. А., Колбас Ю. Ю. et al., Системотехника: Системные проблемы надежности, качества и информационных технологий 2016 № 11
The methods of increasing the accuracy of inertial measurement units (IMU) on Zeeman laser gyros and quartz accelerometers are considered. Design solutions for the rigid installation of the IMU components with the exact reference of the measurement axes and also for IMU maintainability are presented. The principles of quasifourmode Zeeman laser gyro, mathematical algorithms, providing ...
Added: March 14, 2017
Yakovlev E., Епифанов В. Ю., Известия высших учебных заведений. Поволжский регион. Физико-математические науки 2018 № 2(46) С. 47-55
The objects of research are two-dimensional compact polyhedra with an Euclidean cell decomposition, which are pseudomanifolds with boundary. The goal is to create new effective algorithms for computing the bases of absolute and relative homology groups modulo 2. Proposed a reduction procedure to a similar problem for polyhedra of lesser dimensionality, containing fewer number of cells. We ...
Added: October 4, 2018
Vorobyova N. I., , in : Логистика: современные тенденции развития. Материалы XV Международной научно-практической конференции 7, 8 апреля 2016. : СПб. : ГУМРФ имени адмирала С.О. Макарова, 2016. P. 261-264.
The article contains enhanced algorithm for calculating the parameters of EOQ model that takes into account simultaneous multi-product supplies and all unit quantity discounts. ...
Added: February 20, 2018
Bliznets Ivan, Fomin F., Pilipczuk M. et al., Algorithmica 2016 Vol. 76 No. 2 P. 569-594
We prove that in a graph with n vertices, induced chordal and interval subgraphs with the maximum number of vertices can be found in time 2^(𝜆𝑛) for some 𝜆<1. These are the first algorithms breaking the trivial 2^𝑛 poly(n) bound of the brute-force search for these problems. ...
Added: October 26, 2018
Гнатенко А. Р., Zakharov V., В кн. : Дискретные модели в теории управляющих систем: Х Международная конференция, Москва и Подмосковье, 23-25 мая 2018 г. : Труды. : МГУ, МАКС Пресс, 2018. С. 131-133.
The expressive power of a new variant of temporal logic LP-CTL * is studied. In this logic, two classes of LP-1-LTL and LP-n-LTL formulas were distinguished and it was shown that the LP-1-LTL fragment more expressive than the known temporal logic of linear time LTL, and the LP-n-LTL fragment has the same expressive possibilities as ...
Added: June 14, 2018
Dmitry Tonkonog, Tancer M., / Cornell University. Series math "arxiv.org". 2012.
A good cover in R^d is a collection of open contractible sets in R^d such that the intersection of any subcollection is either contractible or empty. Motivated by an analogy with convex sets, intersection patterns of good covers were studied intensively. Our main result is that intersection patterns of good covers are algorithmically unrecognizable.
More precisely, ...
Added: February 20, 2013
Фотеева А. В., Феофилова А. Е., Ростова Н. Б. et al., Медико-фармацевтический журнал "Пульс" 2022 Т. 24 № 4 С. 38-43
Abstract. The modern regulatory requirements for pharmaceutical development, stricter of requirements of
medicinal products (MP) quality standards, the experience of manufacturers and development companies in terms of MP pharmaceutical development revealed need to create solutions that minimize the risk of medicinal product quality deviations, guaranteeing the release of effective and safe MP with the planned quality. The aim of these study is to ...
Added: May 13, 2022
Ivanov I., Ivanov O., Uvaysov S. U. et al., , in : 2016 International Siberian Conference on Control and Communications (SIBCON). Proceedings. : M. : HSE, 2016.
In this paper the algorithm for battery charge control of renewable energy sources - wind turbine and solar panel. Every operating block is also described with specifying the dependencies. The principle of the charging current limitation that prevents battery failure as a result of a strong internal resistance increase while preliminary deep discharge is considered. ...
Added: September 12, 2016
Heidelberg : Springer, 2013
Added: April 11, 2019
Pavolotsky A. V., В кн. : Информатика. Учебник для 7 класса. Ч. 2.: М. : Баласс, 2012. Гл. 1. С. 8-67.
В главе вводятся и объясняются понятие алгоритма, способы его записи. Даются базовые элементы языка Паскаль. Проводится краткий экскурс в историю языков программирования. Обязательными элементами являются описание основных алгоритмических конструкций и работы в среде программирования. ...
Added: March 14, 2013
Лакомкин Е. Д., Пузыревский И.В., Рыжова Д. А., В кн. : Доклады всероссийской научной конференции АИСТ’2013. : М. : Национальный открытый университет «ИНТУИТ», 2013. С. 184-195.
Статья посвящена анализу работы широко известных в англоязычной литературе статистических алгоритмов POS-теггинга, основанных на скрытой марковской модели (HMM) и марковской модели максимальной энтропии (MEMM), в применении к задаче морфологической дизамбигуации в русском языке. В работе описан эксперимент, результаты которого показывают, что в целом эти модели демонстрируют эффективность POS-теггинга, близкую к результатам применения данных моделей к ...
Added: October 1, 2014
Protasov V., Jungers R., Linear Algebra and its Applications 2013 Vol. 438 No. 11 P. 4448-4468
We introduce a new approach to evaluate the largest Lyapunov exponent of a family of nonnegative matrices. The method is based on using special positive homogeneous functionals on , which gives iterative lower and upper bounds for the Lyapunov exponent. They improve previously known bounds and converge to the real value. The rate of convergence ...
Added: February 23, 2016
Aminev D., Журков А. П., Козырев А. А. et al., Труды Научно-исследовательского института радио 2014 № 4 С. 11-17
The problem of providing the testability of the direction-finding equipment position (DFEP) is considered. Structural circuits RDF systems and DFEP is presented. Enlarged and more detailed schemes of algorithms and algorithm of control joints DFEP is given. ...
Added: December 12, 2015
Pavolotsky A. V., В кн. : Информатика. Учебник для 9 класса. Ч. 2.: М. : Баласс, 2012. Гл. 1. С. 8-87.
В качестве продолжения линии "Алгоритмизация и программирование" в главе рассматриваются основы систем счисления, символьный и строковый типы данных, многомерные массивы, принципы рекурсивного программирования, работа с файлами и со случайными числами. ...
Added: March 14, 2013
Zhalinsky A. E., Российский криминологический взгляд 2008 № 4 С. 193-197
1. Description of the problem. Instrumental analysis makes it possible to find the arguments of adjudication on the bounders and structure of corpus delicti, its correlation to criminal and filling-up legislation. 2. Initial theses. Corpus delicti is regarded as that expressed in criminal law doctrine result of reorganization of orders of criminal law into other ...
Added: October 14, 2012
Klimenkova O., Shchur L., Journal of Physics: Conference Series 2021 Vol. 1740 No. 012030 P. 1-5
We propose a novel algorithm for the construction of the sparse, nonetheless, the massive and rigid structure. The generated structures possess two significant properties reminiscent of the metallic foams. Firstly, the weight of the structures can be as low as the percent of the bulk one. Secondly, the structures are mechanically rigid. The structures are ...
Added: January 22, 2021
Trubochkina N. K., Кондратьев Н. В., Мир техники кино 2015 Т. 37 № 3 С. 6-16
A new approach in the development of three-dimensional movies without glasses, but rather, the technique of fantastic graphics and media worlds creating with the help of mathematics and computer software, as the basis for the subsequent encoding a lenticular screen, is proposed. A parametric fractals calculation model, taking into account the position of the virtual ...
Added: October 23, 2015
Lazarev A. A., Carballo L., Vakhania N. et al., , in : IFAC Proceedings Volumes 14th IFAC Symposium on Information Control Problems in Manufacturing, Bucharest, 23-25 May 2012. : Бухарест : IFAC Technical Committee, 2012. P. 381-386.
We present an approach based on a two-stage ltration of the set of feasible solutions for the multiprocessor job-shop scheduling problem. On the rst stage we use extensive dominance relations, whereas on the second stage we use lower bounds. We show that several lower bounds can eciently be obtained and implemented. ...
Added: February 12, 2013
Gnatenko A., Zakharov V., Proceedings of the Institute for System Programming of the RAS 2018 Vol. 30 No. 3 P. 303-324
The syntax and semantics of the new temporal logic LP-CTL * designed for the formal specification of the behavior of sequential responsive programs, modeled by automata-transducers (transducers) over semigroups, are developed. An algorithm is developed for verifying the feasibility of the formulas of the proposed temporal logic on models represented by finite transducers working on ...
Added: June 14, 2018
Penzar D., Krivozubov M., Spirin S., BMC Bioinformatics 2018 Vol. 19 No. 374 P. 1-14
Background. Many algorithms and programs are available for phylogenetic reconstruction of families of proteins. Methods used widely at present use either a number of distance-based principles or character-based principles of maximum parsimony or maximum likelihood.
Results. We developed a novel program, named PQ, for reconstructing protein and nucleic acid phylogenies following a new character-based principle. Being ...
Added: October 26, 2018
Ponomarenko A., Yury M., Andrey L. et al., Business Informatics 2014
The ability to scale is desirable in computer system as well as business settings. The distributed systems clearly demonstrate this ability and powerfulness to process a very big amount of data. Many system that have distributed architecture like Hadoop file system or distributed torrent tracker are based on the distribute hash table (DHT) which manages ...
Added: October 20, 2014
Protasov V., Guglielmi N., Foundations of Computational Mathematics 2013 Vol. 13 No. 1 P. 37-97
We address the problem of the exact computation of two joint spectral characteristics of a family of linear operators, the joint spectral radius (JSR) and the lower spectral radius (LSR), which are well-known different generalizations to a set of operators of the usual spectral radius of a linear operator. In this paper we develop a ...
Added: February 23, 2016