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ИНСТИТУТ БИОИНФОРМАТИКИ. СБОРНИК ТЕЗИСОВ 2020/21
Bukley G.
Bioinformatics Institute 2020/21. Project abstracts. Bioinformatics Summer School 2021. Abstracts.
Priority areas:
IT and mathematics
Language:
English
Medvedev M., Journal of Chemical Theory and Computation 2026 Vol. 22 No. 9
Density functional theory (DFT) is the workhorse of modern reactions and materials modeling. While the exact functional remains unknown, many approximations to it have been constructed either by hand-crafting functional forms to satisfy exact constraints or by machine learning. In this work, we show how both of these approaches can be fused to build both ...
Added: June 26, 2026
Gadzhimirzaev S., Хельвас А. В., Computer Research and Modeling 2026 Vol. 18 No. 2 P. 423–438
This article presents a model of a fully automated warehouse with deep storage racks designed
for boxed goods storage. The study focuses on optimizing warehouse operations through discrete
multiagent simulation of shuttle movements for pallet loading and unloading tasks. The authors
investigate various product placement strategies, including the Nearest Channel Positioning Algorithm
(NCPA), Most Empty ChannelGroup Placement (MECGP), and ...
Added: June 24, 2026
Podolskaia E., Sinitsina A., European Journal of Forest Engineering 2026 Vol. 12 No. 1 P. 7–21
Machine learning in transport modeling has become a trend in science and industry. In this paper, we observe its main directions and focus on a dataset of seasonal road creation. Seasonality as a parameter in transport modeling has a significant impact on transport scenarios but is underestimated worldwide and in Russia, despite modern data challenges. ...
Added: June 24, 2026
Piontkovski D., / Series arXiv "math". 2026.
A noncommutative projective variety is defined, following Artin and Zhang, by a graded coherent algebra 𝐴. The category of coherent sheaves is then the quotient qgr(𝐴) of the category of finitely presented graded modules by the subcategory of torsion modules. We consider the categorical and polynomial entropies of the Serre twist, that is, of the ...
Added: June 23, 2026
Piontkovski D., / Series arXiv "math". 2025.
If a symmetric multilinear algebra is weakly nil, then it is Engel. This result may be regarded as an infinite-dimensional analogue of the well-known Jacobian theorem, which states that if a polynomial mapping has a polynomial inverse, then its Jacobian matrix is invertible. This refines a theorem of Gerstenhaber and partially answers a question posed ...
Added: June 23, 2026
Atlasov B., Selskiy A., Russian Journal of Information Technology in Sports 2025 Vol. 2 No. 1 P. 13–21
The article examines the current state of the global virtual and augmented reality (VR/AR) technology market in sports, noting its growth, although slower than previously expected. Special attention is paid to the Russian market, where the development of VR technologies in sports lags behind world leaders such as the United States, EU countries and China, ...
Added: June 23, 2026
[б.и.], 2026.
Added: June 23, 2026
Ryskina H., Лобаева Т. А., Ануркина А. И., Ваш формат, 2025.
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Эволюция, экология, генетика человека, медицинская паразитология. Практикум. Аннотация
Аннотация к практикуму «Эволюция, экология, генетика человека, медицинская паразитология»
Учебное пособие «Эволюция, экология, генетика человека, медицинская паразитология. Практикум» (авторы: Лобаева Т. А., Рыскина Е. А., Ануркина А. И.; издательство «Ваш формат», 2025 год, 194 страницы) предназначено для студентов высших учебных заведений. Цель практикума — обеспечить комплексное освоение ключевых разделов биологии с акцентом на их прикладное значение в медицине. ...
Added: June 23, 2026
IEEE, 2026.
The 9th International Scientific Conference on Information, Control, and Communication Technologies (ICCT-2025) had been held October 7-11, 2025 in Gomel, Belarus. The main technical areas and applications covered by the proceedings are optoelectronics, acousto-optic, microwave technology, antenna systems, measuring technology, metamaterials, nanostructures, nanofilms, photonic crystals, biology and medicine, biophotonics, bioengineering, neural networks in communication technologies; ...
Added: June 23, 2026
Buzaev F., Mullakhmetov R., Bogachev R. et al., Association for Computational Linguistics, 2026.
Playlist generation based on textual queries using large language models (LLMs) is becoming an important interaction paradigm for music streaming platforms. User queries span a wide spectrum from highly personalized intent to essentially catalog-style requests. Existing systems typically rely on non-personalized retrieval/ranking or apply a fixed level of preference conditioning to every query, which can ...
Added: June 22, 2026
Herbert A., Cherednichenko O., Lybrand T. et al., International Journal of Molecular Sciences 2025 Vol. 26 No. 6 Article 2422
The double-stranded RNA editing enzyme ADAR1 connects two forms of genetic programming, one based on codons and the other on flipons. ADAR1 recodes codons in pre-mRNA by deaminating adenosine to form inosine, which is translated as guanosine. ADAR1 also plays essential roles in the immune defense against viruses and cancers by recognizing left-handed Z-DNA and ...
Added: June 22, 2026
Калужский печатный двор, 2026.
Conference Proceedings INTERNATIONAL CONFERENCE
“Mathematical Ideas of Academician
P.L. Chebyshev, Their Applications in Natural
Sciences and Artificial Intelligence Technologies”
dedicated to the 205th anniversary of his birth ...
Added: June 20, 2026
Kyrchanova O., Kudryashova K., Ibragimov A. et al., Development 2025 Vol. 152 No. 19 Article 205051
Drosophila homeotic gene Abdominal-B (Abd-B) is controlled throughout development by four infraabdominal (iab) regulatory domains, the active or repressed state of which is determined by initiators that have parasegment-specific enhancer activity at an early stage of embryonic development. For this reason, it has long been assumed that the enhancer activity and initiation function of these elements are synonymous. ...
Added: June 20, 2026
Kyrchanova O., Ksenia Kudryashova, Dubrovskaya V. et al., Open Biology 2025 Vol. 15 No. 11 Article 250192
The specification of abdominal segments A5 to A9 depends on the expression of Abdominal-B (Abd-B), which is regulated by four infraabdominal domains: iab-5 through iab-8,9. Each iab domain contains an initiation element that determines its active state, along with enhancers responsible for tissue-specific activation of Abd-B. These iab domains function autonomously due to their flanking boundaries, Fab-6, Fab-7 and Fab-8, which both block crosstalk between adjacent iab domains (insulator function) and facilitate long-range ...
Added: June 20, 2026
Stognieva O., Чеснокова Н. Е., Отечественная и зарубежная педагогика 2026 Т. 1 № 3 (115) С. 123–131
Integration of generative artificial intelligence tools into educational practice highlights the need for pedagogically grounded approaches to their use in the creation of educational video content, which is increasingly applied in language and professionally oriented instruction.
The purpose of this article is to conduct a comparative analysis of educational video content created using generative AI tools ...
Added: June 20, 2026
Kudryashova K.S., Deriglazova I. O., Osadchiy I. S. et al., Genes 2025 Vol. 16 No. 1 Article 3
Background/Objectives: Transcriptional promoters play an essential role in regulating protein expression. Promoters with weak activity generally lead to low levels of expression, resulting in fewer proteins being produced. At the same time, strong promoters are commonly used in studies using transgenic organisms as model systems. This approach can have various negative consequences for the organism, ...
Added: June 20, 2026
Ksenia Kudryashova, Filippova E., Kryukova E. et al., Archives of Biochemistry and Biophysics 2025 Vol. 769 Article 110437
β-Bungarotoxins (β-BuTx), consisting of covalently bound phospholipase A2 subunit (A-chain), a member of group Ia of secretory phospholipases A2, and non-enzymatic subunit (B-chain) structurally related to Kunitz-type protease inhibitors, block presynaptic neuromuscular transmission via a not completely defined mechanism of action. In vivo physiological studies revealed that the B-chain is targeting voltage-gated potassium channels of not identified subtypes. In our work, six β-BuTx isoforms were ...
Added: June 20, 2026
Cherednichenko O., Herbert A., Poptsova M., Computational and Structural Biotechnology Journal 2025 Vol. 27 P. 992–1000
Large language models (LLMs) in genomics have successfully predicted various functional genomic elements. While their performance is typically evaluated using genomic benchmark datasets, it remains unclear which LLM is best suited for specific downstream tasks, particularly for generating whole-genome annotations. Current LLMs in genomics fall into three main categories: transformer-based models, long convolution-based models, and state-space models ...
Added: June 19, 2026
Poptsova M., Briefings in Bioinformatics 2025 Vol. 26 No. 2 P. 1–11
Kolmogorov–Arnold networks (KANs) emerged as a promising alternative for multilayer perceptrons (MLPs) in dense fully connected networks. Multiple attempts have been made to integrate KANs into various deep learning architectures in the domains of computer vision and natural language processing. Integrating KANs into deep learning models for genomic tasks has not been explored. Here, we ...
Added: June 19, 2026
Анненков А. Н., Nesterov R., Моделирование и анализ информационных систем 2026 Т. 33 № 2 С. 176–205
Declarative process models are widely used in process mining to describe flexible process behavior through sets of constraints. However, models discovered automatically from event logs may contain inconsistent constraints, which can make them difficult to interpret and unusable for execution, conformance checking, or further analysis. Existing methods for consistency analysis either rely on automata-based constructions ...
Added: June 18, 2026
Shipilov F., Barnyakov A., Ivanov A. et al., / Series Physics "arxiv.org". 2026.
A fast simulation of the detector response is a vital task in high-energy physics (HEP). Traditional Monte-Carlo methods form the backbone of modern particle physics simulation software but are computationally expensive. We present a machine-learning-based approach to fast simulation of the Focusing Aerogel Ring Imaging Cherenkov (FARICH) detector response. Given a particle track and momentum, ...
Added: May 19, 2026
Beknazarov N., , in: Parallel Computational Technologies, 19th International Conference, PCT 2025, Moscow, Russia, April 8–10, 2025, Revised Selected Papers. (CCIS, volume 2891)Vol. 2891.: Springer, 2026. P. 3–16.
This paper addresses the challenge of efficiently training Large Language Models (LLMs) on large-scale, sparse omics datasets in high-performance computing (HPC) environments. Using over 1000 BED tracks as a representative data source, we propose a method combining interval-based chunked storage, sparse matrix transformation, and parallel data loading, integrated within a PyTorch Lightning training framework. Our ...
Added: May 19, 2026
Derkacheva A., Sakirkina M., Kraev G. et al., /. 2026.
Comprehensive data on natural hazards and their consequences are crucial for effective for risk assessment, adaptation planning, and emergency response. However, many countries face challenges with fragmented, inconsistent, and inaccessible data, particularly regarding local-scale events. To address this data gap in Russia, we developed an end-to-end processing pipeline that scrapes news from various online sources, ...
Added: April 28, 2026
NY: Association for Computing Machinery (ACM), 2026.
It is our great pleasure to welcome you to the 35th edition of the Web Conference to be held on June 29 – July 3, 2026, in Dubai, United Arab Emirates.
Following discussions with our partners and key stakeholders, we have taken the decision to postpone the ACM Web Conference 2026, initially planned for April 2026. ...
Added: April 23, 2026