• A
  • A
  • A
  • АБВ
  • АБВ
  • АБВ
  • A
  • A
  • A
  • A
  • A
Обычная версия сайта
  • RU
  • EN
  • HSE University
  • Publications
  • Book chapter
  • PIConGPU on Desmos Supercomputer: GPU Acceleration, Scalability and Storage Bottleneck
  • RU
  • EN
Расширенный поиск
Высшая школа экономики
Национальный исследовательский университет
Priority areas
  • business informatics
  • economics
  • engineering science
  • humanitarian
  • IT and mathematics
  • law
  • management
  • mathematics
  • sociology
  • state and public administration
by year
  • 2028
  • 2027
  • 2026
  • 2025
  • 2024
  • 2023
  • 2022
  • 2021
  • 2020
  • 2019
  • 2018
  • 2017
  • 2016
  • 2015
  • 2014
  • 2013
  • 2012
  • 2011
  • 2010
  • 2009
  • 2008
  • 2007
  • 2006
  • 2005
  • 2004
  • 2003
  • 2002
  • 2001
  • 2000
  • 1999
  • 1998
  • 1997
  • 1996
  • 1995
  • 1994
  • 1993
  • 1992
  • 1991
  • 1990
  • 1989
  • 1988
  • 1987
  • 1986
  • 1985
  • 1984
  • 1983
  • 1982
  • 1981
  • 1980
  • 1979
  • 1978
  • 1977
  • 1976
  • 1975
  • 1974
  • 1973
  • 1972
  • 1971
  • 1970
  • 1969
  • 1968
  • 1967
  • 1966
  • 1965
  • 1964
  • 1963
  • 1958
  • More
Subject
News
September 9, 2026
‘Balkan Hospitality Opens Doors: Studying Dialects on the Verge of Extinction
You cannot study spoken dialects from books. Instead, you need to go to a village, seek out its elders, and earn the trust of local residents before you can record hours of spontaneous stories. This is how Natalia Muravleva, Associate Professor at the Faculty of Humanities, conducts her research. Her internship in Serbia continued her long-standing study of dialects spoken by Macedonian settlers. In this interview, she discusses how diaspora cultural centres help researchers reach informants, why native speakers need to be interviewed only in their own language (otherwise, as she puts it, they may 'break'), and how a single field season helped her finalise her monograph. She also shares warm memories of autumn in Belgrade and of colleagues with whom grammar can be discussed in three languages at once.
September 9, 2026
Scientists Train Neural Network to Generate Process Plans from 3D Models
Researchers at the HSE FCS AI and Digital Science Institute have developed CAD2TechSpec, a framework that converts 3D models of mechanical parts into machining process plans—step-by-step instructions for machine tools. The solution aims to reduce the time required for the design and preparation of technical process documentation in mechanical engineering, aircraft manufacturing, and other high-tech industries. The study findings have been published in PeerJ Computer Science.
September 7, 2026
Biologists Discover 'Molecular Fingerprint' of Preeclampsia
Researchers at HSE University employed a new method to model hypoxia in placental cells during pregnancies complicated by preeclampsia and identified molecular markers of tissue hypoxia. Since hypoxia is one of the key mechanisms underlying preeclampsia, these findings are important for a more accurate and timely diagnosis of the disease and for the development of effective treatment methods. The paper has been published in Placenta.

 

Have you spotted a typo?
Highlight it, click Ctrl+Enter and send us a message. Thank you for your help!

Publications
  • Books
  • Articles
  • Chapters of books
  • Working papers
  • Report a publication
  • Research at HSE

?

PIConGPU on Desmos Supercomputer: GPU Acceleration, Scalability and Storage Bottleneck

P. 290–302.
Pugachev L., Umarov I., Popov V., Andreev N., Stegailov V., Alexei Timofeev

Particle-in-Cell models are among the most demanding computational problems that require appropriate supercomputing hardware. In this paper we consider the solution of generic PIC problems on the Desmos supercomputer equipped with novel AMD MI50 GPUs and Angara interconnect. The open-source PIConGPU code is used. The acceleration limits and bottlenecks for this type of calculations are considered.

Language: English
DOI
Text on another site
Keywords: GPU

In book

Supercomputing: 8th Russian Supercomputing Days, RuSCDays 2022, Moscow, Russia, September 26–27, 2022, Revised Selected Papers
Vol. 13708. , Springer, 2022.
Similar publications
Scaling Up Molecular Hydrodynamics of Non-Laminar Flows with GPU-Aware MPI
Khnkoian G., Galigerov V., Grishichkin Y. et al., , in: Parallel Computational Technologies, 19th International Conference, PCT 2025, Moscow, Russia, April 8–10, 2025, Revised Selected Papers. (CCIS, volume 2891)Vol. 2891.: Springer, 2026. P. 532–545.
This work presents atomic-scale modeling of the perturbed flow of a Lennard-Jones fluid in a quasi-two-dimensional system containing one billion atoms. A statistically stationary flow regime corresponding to a Reynolds number of Re ≈ 1000 has been achieved, the flow structure has been analyzed, and the energy spectrum of velocities has been calculated. The results ...
Added: May 19, 2026
Russian Supercomputing Days: Proceedings of the International Conference
M.: Max press, 2025.
The book contains full papers in Russian, short papers and poster abstracts included in the agenda of the International Conference “Russian Supercomputing Days”. ...
Added: September 12, 2025
GPU-based molecular dynamics of fluid flows: Reaching for turbulence
Pavlov D., Galigerov V., Kolotinskii D. et al., International Journal of High Performance Computing Applications 2024 Vol. 38 No. 1 P. 34–49
Fluid dynamics is a ubiquitous problem that arises in different branches of science and industry. It is usually tackled by numerically solving differential equations on a finite grid. Molecular dynamics was not a feasible tool to approach fluid dynamics until very recently due to its disproportional computational complexity. In this paper we propose a new ...
Added: July 18, 2023
Performance Analysis of GPU-Based Code for Complex Plasma Simulation
Kolotinskii D., Alexei Timofeev, , in: Supercomputing: 8th Russian Supercomputing Days, RuSCDays 2022, Moscow, Russia, September 26–27, 2022, Revised Selected PapersVol. 13708.: Springer, 2022. P. 276–289.
According to the TOP-500 supercomputer ranking [27], since 2017, the share of supercomputers which have NVIDIA V100 and A100 graphics accelerators has been continuously growing, reaching 80% by November 2021 from the total number of supercomputers with accelerators and co-processors. This paper presents the results of an assessment of energy and economic efficiency, as well as ...
Added: May 16, 2023
HEDGE: Highly accurate GPU-powered protein-protein docking pipeline
Ermak T., Shehovtsov A., Yakovlev P., , in: MATHEMATICAL MODELING AND HIGH-PERFORMANCE COMPUTING IN BIOINFORMATICS, BIOMEDICINE AND BIOTECHNOLOGY (MM-HPC-BBB-2018). The 3rd International Symposium.: Novosibirsk: Институт вычислительной математики и математической геофизики Сибирского отделения РАН, 2018. P. 1–1.
Added: September 24, 2021
Алгоритмы локальной минимизации силового поля для трехмерного представления макромолекул
Аникин А. С., Большакова О. А., Гасников А. В. et al., Журнал вычислительной математики и математической физики 2019 Т. 59 № 12 С. 2060–2076
Большинство проблем структурной вычислительной биологии требуют решения задачи минимизации энергетической функции (силового поля), определенной на геометрии молекулы. Это позволяет определять свойства молекул, предсказывать правильное положение белковых цепей, находить лучшую состыковку молекул при предсказании комплексообразования (докинге), проверять гипотезы относительно белкового дизайна и решать многие другие задачи, возникающие при современной разработке лекарственных средств. В случае низкомолекулярных соединений ...
Added: September 24, 2021
Improve Method Using Spatial Fast Filters and GPU to Detection of Parcels of Land in Satellite Images for Cadaster Purposes
Cadena L., Cadena F., Легалов А. И. et al., , in: Proceedings of The World Congress on Engineering and Computer Science 2018, 23-25 October, 2018. San Francisco, USAVol. 1.: Newswood Limited, 2018. P. 453–458.
Nowadays, remotely sensed images are used for various purposes in different applications. One of them is the cadastral application using high resolution satellite imagery. The edge detection has an important role in image processing, especially in the detection and the extraction physical features, those which are useful to their enforcement in the analysis of cadasters. ...
Added: October 31, 2020
Implementation of an XSL block cipher with MDS-matrix linear transformation on NVIDIA CUDA
Fomin D., Математические вопросы криптографии 2015 Vol. 6 No. 2 P. 99–108
In this article we consider NVIDIA GPU implementation aspects of an XSL block cipher over the finite field with MDS-matrix linear transformation. We compare obtained results with some other block ciphers. ...
Added: May 4, 2019
A timing attack on CUDA implementations of an AES-type block cipher
Fomin D., Математические вопросы криптографии 2016 Vol. 7 No. 2 P. 121–130
A timing attack against an AES-type block cipher CUDA implementa- tion is presented. Our experiments show that it is possible to extract a secret AES 128-bit key with complexity of 2^32 chosen plaintext encryptions. This approach may be applied to AES with other key sizes and, moreover, to any block cipher with a linear transform that is ...
Added: May 4, 2019
GPU-Accelerated Population Annealing Algorithm: Frustrated Ising Antiferromagnet on the Stacked Triangular Lattice
Borovský M., Weigel M., Barash L.Yu. et al., EPJ Web of Conferences 2016 Vol. 108 P. 02016-p.1–02016-p.6
The population annealing algorithm is a novel approach to study systems with rough free-energy landscapes, such as spin glasses. It combines the power of simulated annealing, Boltzmann weighted differential reproduction and sequential Monte Carlo process to bring the population of replicas to the equilibrium even in the low-temperature region. Moreover, it provides a very good ...
Added: January 31, 2018
Performance of MD-Algorithms on hybrid systems-on-chip Nvidia Tegra K1 & X1
Nikolskiy V., Vecher V., Stegailov V., , in: Supercomputing. RuSCDays 2016. Communications in Computer and Information Science. Revised Selected Papers.Vol. 687.: Springer, 2016. P. 199–211.
In this paper we consider the efficiency of hybrid systemson-a-chip for high-performance calculations. Firstly, we build Roofline performance models for the systems considered using Empirical Roofline Toolkit and compare the results with the theoretical estimates. Secondly, we use LAMMPS as an example of the molecular dynamic package to demonstrate its performance and efficiency in various ...
Added: May 31, 2017
Gaze Tracking Acceleration using CUDA Technology
Gostev I. M., Sibirtseva E. A., RUDN Journal of Mathematics, Information Sciences and Physics 2014 No. 4 P. 68–84
Low-cost gaze tracking systems are in great demand due to their wide range of application. Commonly, extra devices are needed (for instance, head mounted cameras); however, in this investigation gaze tracking is performed in real-time based on the video stream from an infrared video camera. A comparative analysis of the existing analogues was executed and ...
Added: December 7, 2014
  • About
  • About
  • Key Figures & Facts
  • Sustainability at HSE University
  • Faculties & Departments
  • International Partnerships
  • Faculty & Staff
  • HSE Buildings
  • HSE University for Persons with Disabilities
  • Public Enquiries
  • Studies
  • Admissions
  • Programme Catalogue
  • Undergraduate
  • Graduate
  • Exchange Programmes
  • Summer University
  • Summer Schools
  • Semester in Moscow
  • Business Internship
  • Research
  • International Laboratories
  • Research Centres
  • Research Projects
  • Monitoring Studies
  • Conferences & Seminars
  • Academic Jobs
  • Yasin (April) International Academic Conference on Economic and Social Development
  • Media & Resources
  • Publications by staff
  • HSE Journals
  • Publishing House
  • iq.hse.ru: commentary by HSE experts
  • Library
  • Economic & Social Data Archive
  • Video
  • HSE Repository of Socio-Economic Information
  • HSE1993–2026
  • Contacts
  • Copyright
  • Privacy Policy
  • Site Map
Edit