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Interaction of Nitrite Ions with Hydrated Portlandite Surfaces: Atomistic Computer Simulation Study
Materials. 2023. Vol. 16. No. 14. Article 5026.
The nitrite admixtures in cement and concrete are used as corrosion inhibitors for steel reinforcement and also as anti-freezing agents. The characterization of the protective properties should account for the decrease in the concentration of free NO2− ions in the pores of cement concretes due to their adsorption. Here we applied the classical molecular dynamics computer simulation approach to quantitatively study the molecular scale mechanisms of nitrite adsorption from NaNO2 aqueous solution on a portlandite surface. We used a new parameterization to model the hydrated NO2− ions in combination with the recently upgraded ClayFF force field (ClayFF-MOH) for the structure of portlandite. The new NO2− parameterization makes it possible to reproduce the properties of hydrated NO2− ions in good agreement with experimental data. In addition, the ClayFF-MOH model improves the description of the portlandite structure by explicitly taking into account the bending of Ca-O-H angles in the crystal and on its surface. The simulations showed that despite the formation of a well-structured water layer on the portlandite (001) crystal surface, NO2− ions can be strongly adsorbed. The nitrite adsorption is primarily due to the formation of hydrogen bonds between the structural hydroxyls on the portlandite surface and both the nitrogen and oxygen atoms of the NO2− ions. Due to that, the ions do not form surface adsorption complexes with a single well-defined structure but can assume various local coordinations. However, in all cases, the adsorbed ions did not show significant surface diffusional mobility. Moreover, we demonstrated that the nitrite ions can be adsorbed both near the previously-adsorbed hydrated Na+ ions as surface ion pairs, but also separately from the cations.
Publication based on the results of:
Malinovsky A. M., Пилипенко С. В., Mikhalchenko A. O. et al., Astronomy Reports 2026 Vol. 70 P. 1–6
Radiation from rotational transitions of CO molecules in distant galaxies creates a chaotic background with an intensity reaching 1000 Jy/sr at a wavelength of approximately 1 mm. This background will pose a serious problem, when measuring spectral distortions of the cosmic microwave background, in particular, the mu-distortion, which presumably has an intensity of less than ...
Added: May 19, 2026
Kaveev A. K., Fedorov V. V., Pavlov A. V. et al., Journal of Materials Chemistry C 2026 Vol. 14 No. 7 P. 2697–2705
Bismuth nanostructures represent a promising material platform for semiconductor nanooptoelectronics and colorimetry owing to the multi-colored light reflection and quantum confinement. In this work, we study the photoluminescent properties of bismuth nanostructures grown using molecular beam epitaxy on the planar CaF2/Si(111) surface. We demonstrate the different surface morphologies of Bi, ranging from planar films obtained ...
Added: May 19, 2026
Pavlova T., V.M. Shevlyuga (Шевлюга В. М., Applied Surface Science 2026 Vol. 736 P. 166813–166813
The objective of miniaturizing doped areas in silicon, with the ultimate goal of achieving atomic-precision doping, requires a fundamental understanding of the dopant incorporation process at the atomic level. We present a combined scanning tunneling microscopy (STM) and density functional theory (DFT) investigation of single phosphorus atom incorporation into the Si(100) surface. Phosphorus was supplied ...
Added: May 19, 2026
Pasternak D., Romshin A., Khmelnitsky Р. et al., Carbon 2026 Vol. 256 Article 121655
A single-photon source (SPS) is a key component required for quantum communication devices. We report the
discovery of bright diamond-based SPS created by nature. It is shown that narrow (≤2 nm) lines observed in the
500-800 nm range in photoluminescence (PL) spectra of the surface layer of untreated Yakut diamonds rich in
nitrogen and hydrogen are linked to ...
Added: May 19, 2026
Bezzubov S., Malikov D., Krasnov L. et al., Scientific data 2026 Vol. 13 Article 727
Solubility is a crucial property of organic compounds, impacting their potential applications in synthetic chemistry, materials science and drug design. Moreover, in technological processes mixtures of solvents are often utilized, making the solubility assessment more complicated. Predicting solubility values in mixtures of solvents from a molecular structure can help to address this issue, although a ...
Added: May 19, 2026
Smirnov A., Kurtina D. A., Saitov S. R. et al., Optical Materials: X 2026 Vol. 30 Article 100441
Chiral semiconductor nanostructures and nanoparticles are promising materials for applications in biological sensing, enantioselective separation, photonics, and spin-polarized devices. Here we performed a detailed analysis of optical properties of chiral CdSe nanoplatelets with thickness of 2 and 3 monolayers (ML) with Nacetyl-L-cysteine ligands. We studied the absorption spectra peculiarities, analyzed time-resolved photoluminescence and investigated circular ...
Added: May 18, 2026
Smirnov A., Mantsevich V. N., Saitov S. R. et al., Journal of Applied Physics 2026 Vol. 139 Article 185702
This work presents a comprehensive investigation into the temperature-dependent thermally stimulated conductivity and photoconductivity of vacuum-annealed thin films based on core–shell CdSe/CdS nanoplatelets passivated with oleic acid ligands. Controlled thermal annealing under vacuum conditions leads to a substantial increase in both dark and photoinduced conductivity, which is primarily attributed to partial desorption of the ligands. ...
Added: May 18, 2026
Масютин Д. А., Moiseev E., Komarov S. et al., Письма в Журнал технической физики 2026 Т. 52 № 7 С. 27–30
Исследованы инжекционные полупроводниковые микролазеры с кольцевым резонатором радиусом 15 мкм с несимметричным расположением внутреннего отверстия резонатора. Показано, что асимметрия обеспечивает формирование в диаграмме направленности двух лепестков излучения, разориентированных на 50° относительно оси смещения внутреннего отверстия. Измеренная добротность резонаторов сопоставима с добротностью дисковых резонаторов и находится на уровне ∼ 10^6. ...
Added: May 18, 2026
The Journal of Physical Chemistry Letters 2026 Vol. 17 No. 18 P. 5386–5394
We demonstrate and rationalize the effect of Au nanoparticles (NPs) on the hierarchical g-C3N4/CeO2 heterojunction. g-C3N4/CeO2 decorated with monodispersed plasmonic Au NPs was synthesized. Detailed analyses showed that CeO2 nanocubes and monodispersed Au NPs were evenly distributed over the 2D g-C3N4 surface, forming a robust interface enriched with abundant active sites. The structure enabled efficient separation of photogenerated charge ...
Added: May 16, 2026
Das A., Paul R., Sharma N. et al., Colloids and Surfaces A: Physicochemical and Engineering Aspects 2026 Vol. 728 P. 138830
Niobium-doped TiO2 (Nb-TiO2), demonstrates dual functionality as an efficient photocatalyst for dye degradation and a promising photoelectrocatalyst for water oxidation. Nb incorporation via a facile hydrothermal method was confirmed by XRD (Rietveld refinement), XPS, TEM, FT-IR, Raman, and BET analyses, indicating successful lattice doping and structural modification. Photocatalytic dye degradation experiments were conducted using a model ...
Added: May 16, 2026
Kolokolov I., Lebedev V., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 2026 Vol. 113 Article 054117
We theoretically investigate the correlation functions of the phase of a light wave propagating through a
turbulent medium. We use an equation for the logarithm of a wave packet envelope, which includes a secondorder
nonlinear term. Based on this equation, we develop a diagrammatic technique to calculate corrections
to the correlation function obtained in the linear approximation. We ...
Added: May 15, 2026
Гущина В. А., / Series chemrxiv-2023-vpzhz-v2 "ChemRxiv". 2023.
All-inorganic perovskite CsPbBr3 and Cs4PbBr6 nanoparticles are being intensively studied due to their unique properties and wide range of applications; however, however, the nature of their optical properties is not yet fully understood due to the difficulty of synthesis of singlephase nanoparticles. In this article we describe the features of the synthesis of single-phase particles ...
Added: May 14, 2026
Гущина В. А., Mendeleev Communications 2025 Vol. 35 No. 2 P. 193–195
All-inorganic perovskite CsPbBr3 and Cs4PbBr6 nanoparticles are intensively studied for their unique optical properties, though synthesizing single-phase nanoparticles has posed challenges. Detailed synthesis method of CsPbBr3 and Cs4PbBr6 single-phase nanoparticles and their chemical and phase analysis are described. Distinctive optical characteristics, such as photoluminescence, optical band gap and the Urbach tail region, are revealed and explained within the current ...
Added: May 14, 2026
Nikitiuk B., Nikolay Kondratyuk, Pisarev V., Journal of Molecular Liquids 2025 Vol. 440 Article 128894
Understanding how liquids transition into glassy states under varying thermodynamic conditions remains a fundamental challenge in condensed matter physics. While temperature-driven vitrification has been extensively studied, the effects of high pressure on glass formation are comparatively underexplored -- particularly in molecular liquids. In this work, we employ molecular dynamics simulations to investigate the behaviour of ...
Added: November 12, 2025
Lenev D. Y., Zakharov S. A., V. V. Pisarev, Russian Journal of Physical Chemistry A 2024 Vol. 98 No. 12 P. 2816–2822
Molecular dynamics is used to calculate the vapor–liquid equilibrium and liquid–vapor surface
tension for a methane–ethane system. Good agreement of the parachor value for ethane between the molecular
model and experimental data is shown for the 203–253 K range of temperatures and pressures up to
60 atm. The dependence of the surface tension of the mixture on pressure ...
Added: November 15, 2024
Полянский А. А., Efremov R., Биологические мембраны 2024 Т. 41 № 4 С. 403–421
The paper overviews the results of computational studies of the molecular mechanisms underlying
the adaptation of model cell membranes taking place during their interaction with proteins and peptides. We
discuss changes in the structural and dynamic parameters of the water–lipid environment, the hydrophobic/
hydrophilic organization of the lipid bilayer surface (the so-called “mosaicity”), etc. Taken together,
these effects are ...
Added: September 19, 2024
Pavlova T., Shevlyuga V. M., Journal of Chemical Physics 2024 Vol. 160 No. 5 Article 054701
For the most precise incorporation of single impurities in silicon, which is utilized to create quantum devices, a monolayer of adatoms on the Si(100) surface and a dopant-containing molecule are used. Here we studied the interaction of a phosphorus tribromide with a chlorine monolayer with mono- and bivacancies in a scanning tunneling microscope (STM) at ...
Added: July 2, 2024
T. V. Pavlova, V. M. Shevlyuga, Journal of Chemical Physics 2023 Vol. 159 No. 21 Article 214701
The interaction of the PBr3 molecule with Si dangling bonds (DBs) on a chlorinated Si(100) surface was studied. The DBs were charged in a scanning tunneling microscope (STM) and then exposed to PBr3 directly in the STM chamber. Uncharged DBs rarely react with molecules. On the contrary, almost all positively charged DBs were filled with molecule fragments. ...
Added: January 29, 2024
Privalov A., Vitaly V. Sinitsyn, Vogel M., The Journal of Physical Chemistry Letters 2023 Vol. 14 No. 30 P. 9335–9340
We use 1H and 17O NMR static field gradient diffusometry to measure self-diffusion coefficients of protons (DH) and oxygens (DO) in Nafion 212 with various hydration levels (λ = 4–18). For all samples and both nuclei, we obtain activation energies (Ea) of ≈0.19 eV. Analyzing the hydration-level dependence of DH and DO, we find DO/DH ≈ 1 at λ ≈ 18, resembling ...
Added: October 13, 2023
Nikita A. Kosarim, Armeev G., Alexey K. Shaytan et al., Supercomputing Frontiers and Innovations 2022 Vol. 9 No. 2 P. 56–67
The nucleosome is the basic unit of eukaryotic DNA compaction. It consists of about 147 base pairs wrapped around an octamer of histone proteins. Nucleosomal dynamics provides the availability of packaged DNA for various factors that carry out the vital processes associated with chromatin. It is not completely known how the structure and dynamics of ...
Added: September 4, 2023
Darya Gurina, Ekaterina Odintsova, Krestyaninov M. A. et al., Journal of Molecular Liquids 2023 Vol. 390 No. A Article 122961
The paper presents a study of the behavior of room-temperature ionic liquids with different alkyl chain lengths and anion types in slit negatively charged carbon nanopores of various widths (1÷15 nm) using all-atom molecular dynamics simulations. The structure of the confined ionic liquids is investigated using number, mass, and charge density profiles and radial distribution ...
Added: August 31, 2023
Tararushkin E., Smirnov G., Kalinichev A. G., Minerals 2023 Vol. 13 No. 8 Article 1018
The 10-Å phase is an important member of the family of dense hydrous magnesium silicates (DHMSs) that play a major role in the water budget in the Earth’s upper mantle. Its nominal composition is usually written as Mg3Si4O10(OH)2·xH2O, and its structure is often described as layers of talc with some amount of water present in ...
Added: August 1, 2023
Polyansky A., Roman G. Efremov, Computational and Structural Biotechnology Journal 2023 Vol. 21 P. 2837–2844
Constitutive activation of receptor tyrosine kinases (RTKs) via different mutations has a strong impact on the development of severe human disorders, including cancer. Here we propose a putative activation scenario of RTKs, whereby transmembrane (TM) mutations can also promote higher-order oligomerization of the receptors that leads to the subsequent ligand-free activation. We illustrate this scenario ...
Added: May 19, 2023
Logunov M., Калиничев А. Г., Pisarev V., Высокомолекулярные соединения. Серия А 2022 Т. 64 № 6 С. 470–480
The process of Couette flow of a hydrocarbon liquid in the slit pores has been simulated and the dynamics of the liquid molecules ordering depending on the liquid density and the slit size has been investigated by means of molecular dynamics. Statistical analysis of the resulting regions of ordered molecules of the hydrocarbon fluid has ...
Added: February 28, 2023