Разработка масштабируемой программной инфраструктуры для хранения и обработки данных в задачах вычислительной биологии
This article is an overview of scalable infrastructure for storage and processing of genome data in genetics problems. The overview covers used technologies descriptions, the organization of unified access to genome processing API of different underlying services. The article also covers methods for scalable and cloud computing technologies support. The first service in virtual genome processing laboratory is provided and presented. The service solves transcription factors bindning sites prediction problem. The main principles of service construction are provided. Basic requirements for underlying comptutaion software in virtual laboratory environments are provided. Overview describes the implemented web-service (https://api.ispras.ru/demo/gen) for transcription factors binding site prediction. Provided solution is based on ISPRAS API project as an API gateway and load-balancer; the middle-ware task-manager software for pool of workers support and for communications with Openstack infrastructure; OpenZFS as an intermediate storage with transparent compression support. The described solution is easy to extend with new services fitting the basic requirements.
The proceedings of the 11th International Conference on Service-Oriented Computing (ICSOC 2013), held in Berlin, Germany, December 2–5, 2013, contain high-quality research papers that represent the latest results, ideas, and positions in the field of service-oriented computing. Since the first meeting more than ten years ago, ICSOC has grown to become the premier international forum for academics, industry researchers, and practitioners to share, report, and discuss their ground-breaking work. ICSOC 2013 continued along this tradition, in particular focusing on emerging trends at the intersection between service-oriented, cloud computing, and big data.
Pattern structures, an extension of FCA to data with complex descriptions, propose an alternative to conceptual scaling (binarization) by giving direct way to knowledge discovery in complex data such as logical formulas, graphs, strings, tuples of numerical intervals, etc. Whereas the approach to classification with pattern structures based on preceding generation of classifiers can lead to double exponent complexity, the combination of lazy evaluation with projection approximations of initial data, randomization and parallelization, results in reduction of algorithmic complexity to low degree polynomial, and thus is feasible for big data.
Almost all of the technologies that are now part of the cloud paradigm existed before, but so far the market has not been proposals that bring together emerging technologies in a single commercially attractive solution. However, in the last decade, there were public cloud services, through which these technologies, on the one hand, available to the developer, and on the other - it is clear to the business community. But many of the features that make cloud computing attractive, may be in conflict with traditional models of information security.
Due to the fact that cloud computing bring with them new challenges in the field of information security, it is imperative for organizations to control the process of information risk management in the cloud. In this article on the basis of Common Vulnerability Scoring System, allowing to determine the qualitative indicator of exposure to vulnerabilities of information systems, taking into account environmental factors, we propose a method of risk assessment for different types of cloud deployment environments.
Information Risk Management, determine the applicability of cloud services for the organization is impossible without understanding the context in which the organization operates and the consequences of the possible types of threats that it may face as a result of their activities. This paper proposes a risk assessment approach used in the selection of the most appropriate configuration options cloud computing environment from the point of view of safety requirements. Application of risk assessment for different types of deployment of cloud environments will reveal the ratio counter possible attacks and to correlate the amount of damage to the total cost of ownership of the entire IT infrastructure of the organization.
The practical relevance of process mining is increasing as more and more event data become available. Process mining techniques aim to discover, monitor and improve real processes by extracting knowledge from event logs. The two most prominent process mining tasks are: (i) process discovery: learning a process model from example behavior recorded in an event log, and (ii) conformance checking: diagnosing and quantifying discrepancies between observed behavior and modeled behavior. The increasing volume of event data provides both opportunities and challenges for process mining. Existing process mining techniques have problems dealing with large event logs referring to many different activities. Therefore, we propose a generic approach to decompose process mining problems. The decomposition approach is generic and can be combined with different existing process discovery and conformance checking techniques. It is possible to split computationally challenging process mining problems into many smaller problems that can be analyzed easily and whose results can be combined into solutions for the original problems.
In 2015-2016 the Department of Communication, Media and Design of the National Research University “Higher School of Economics” in collaboration with non-profit organization ROCIT conducted research aimed to construct the Index of Digital Literacy in Russian Regions. This research was the priority and remain unmatched for the momentIn 2015-2016 the Department of Communication, Media and Design of the National Research University “Higher School of Economics” in collaboration with non-profit organization ROCIT conducted research aimed to construct the Index of Digital Literacy in Russian Regions. This research was the priority and remain unmatched for the moment
Companies are increasingly paying close attention to the IP portfolio, which is a key competitive advantage, so patents and patent applications, as well as analysis and identification of future trends, become one of the important and strategic components of a business strategy. We argue that the problems of identifying and predicting trends or entities, as well as the search for technical features, can be solved with the help of easily accessible Big Data technologies, machine learning and predictive analytics, thereby offering an effective plan for development and progress. The purpose of this study is twofold, the first is an identification of technological trends, the second is an identification of application areas and/or that are most promising in terms of technology development and investment. The research was based on methods of clustering, processing of large text files and search queries in patent databases. The suggested approach is considered on the basis of experimental data in the field of moving connected UAVs and passive acoustic ecology control.
The article is dedicated to the analysis of Big Data perspective in jurisprudence. It is proved that Big Data have to be used as the explanatory and predictable tool. The author describes issues concerning Big Data application in legal research. The problems are technical (data access, technical imperfections, data verification) and informative (interpretation of data and correlations). It is concluded that there is the necessity to enhance Big Data investigations taking into account the abovementioned limits.
A model for organizing cargo transportation between two node stations connected by a railway line which contains a certain number of intermediate stations is considered. The movement of cargo is in one direction. Such a situation may occur, for example, if one of the node stations is located in a region which produce raw material for manufacturing industry located in another region, and there is another node station. The organization of freight traﬃc is performed by means of a number of technologies. These technologies determine the rules for taking on cargo at the initial node station, the rules of interaction between neighboring stations, as well as the rule of distribution of cargo to the ﬁnal node stations. The process of cargo transportation is followed by the set rule of control. For such a model, one must determine possible modes of cargo transportation and describe their properties. This model is described by a ﬁnite-dimensional system of diﬀerential equations with nonlocal linear restrictions. The class of the solution satisfying nonlocal linear restrictions is extremely narrow. It results in the need for the “correct” extension of solutions of a system of diﬀerential equations to a class of quasi-solutions having the distinctive feature of gaps in a countable number of points. It was possible numerically using the Runge–Kutta method of the fourth order to build these quasi-solutions and determine their rate of growth. Let us note that in the technical plan the main complexity consisted in obtaining quasi-solutions satisfying the nonlocal linear restrictions. Furthermore, we investigated the dependence of quasi-solutions and, in particular, sizes of gaps (jumps) of solutions on a number of parameters of the model characterizing a rule of control, technologies for transportation of cargo and intensity of giving of cargo on a node station.
Event logs collected by modern information and technical systems usually contain enough data for automated process models discovery. A variety of algorithms was developed for process models discovery, conformance checking, log to model alignment, comparison of process models, etc., nevertheless a quick analysis of ad-hoc selected parts of a journal still have not get a full-fledged implementation. This paper describes an ROLAP-based method of multidimensional event logs storage for process mining. The result of the analysis of the journal is visualized as directed graph representing the union of all possible event sequences, ranked by their occurrence probability. Our implementation allows the analyst to discover process models for sublogs defined by ad-hoc selection of criteria and value of occurrence probability
The geographic information system (GIS) is based on the first and only Russian Imperial Census of 1897 and the First All-Union Census of the Soviet Union of 1926. The GIS features vector data (shapefiles) of allprovinces of the two states. For the 1897 census, there is information about linguistic, religious, and social estate groups. The part based on the 1926 census features nationality. Both shapefiles include information on gender, rural and urban population. The GIS allows for producing any necessary maps for individual studies of the period which require the administrative boundaries and demographic information.
Existing approaches suggest that IT strategy should be a reflection of business strategy. However, actually organisations do not often follow business strategy even if it is formally declared. In these conditions, IT strategy can be viewed not as a plan, but as an organisational shared view on the role of information systems. This approach generally reflects only a top-down perspective of IT strategy. So, it can be supplemented by a strategic behaviour pattern (i.e., more or less standard response to a changes that is formed as result of previous experience) to implement bottom-up approach. Two components that can help to establish effective reaction regarding new initiatives in IT are proposed here: model of IT-related decision making, and efficiency measurement metric to estimate maturity of business processes and appropriate IT. Usage of proposed tools is demonstrated in practical cases.