?
Carbohydrate Structure Database: current state and recent developments
Analytical and Bioanalytical Chemistry. 2025. Vol. 417. P. 1025–1034.
Carbohydrate Structure Database (CSDB) is a curated glycan data collection and a glycoinformatic platform. In this report, its database, analytical, and other components that have appeared for the recent years, are reviewed. The major improvements were achieving close-to-full coverage on glycans from microorganisms, launching modules for glycosyltransferases and saccharide conformations, online glycan builder and 3D modeler, NMR simulator, NMR-based structure predictor, and other tools.
Language:
English
Ostovari Moghaddam A., Mehrabi-Kalajahi S., Solizoda I. A. et al., Metals and Materials International 2026 P. 1–9
Off-stoichiometric boron-doped chemically complex intermetallic alloys (CCIMAs) have recently emerged as a new avenue for overcoming the low temperature brittleness of ordered superlattices. However, their behavior at high temperatures remains unexplored. In this study, a novel (Ni39.6Co29.3Cr10Al15.8Ta3.3Nb2)98.5B1.5 CCIMA was prepared and its oxidation resistance over a wide temperature range (500 °C–950 °C) was studied. The ...
Added: October 1, 2026
Zlotnik A., Математические заметки 2026 Т. 120 № 6 С. 1005–1009
Численным методам решения систем газодинамических уравнений посвящена обширная литература. Ранее было разработано и успешно апробировано специальное семейство симметричных по пространству консервативных разностных методов, основанных на предварительной кинетической, точнее, квазигазодинамической (КГД), регуляризации этих уравнений. Актуальной задачей является построение численных методов, которые обладают не только свойством консервативности по массе, импульсу и полной энергии, но и удовлетворяют условиям энтропийной ...
Added: October 1, 2026
International Joint Conferences on Artificial Intelligence, 2026.
Added: October 1, 2026
Ryumina E., Aksenov A., Сысоев Д. С. et al., IEEE Computer Society, 2026.
Ambivalence/hesitancy recognition in unconstrained videos is a challenging problem due to the subtle, multimodal, and context-dependent nature of this behavioral state. In this paper, a multimodal approach for video-level ambivalence/hesitancy recognition is presented for the 10th ABAW Competition. The proposed approach integrates four complementary modalities: scene, face, audio, and text. Scene dynamics are captured with ...
Added: September 30, 2026
Knyazev E., Чеботарева О. Е., М.: Издательский дом НИУ ВШЭ, 2026.
This teaching and learning guide provides a concise overview of the theoretical and practical aspects of the basic skills required to work in a biological laboratory. It also includes protocols for practical classes conducted as part of the introductory professional training placement for first-year students in the Bachelor’s programme in Cell and Molecular Biotechnology at ...
Added: September 30, 2026
Ivanov F., Kotov F., IEEE Access 2026 Vol. 14 P. 104662–104679
U-UV codes, based on the Plotkin (U, U + V) construction, provide a unified framework that includes polar and Reed–Muller codes and enables flexible design through the choice of component codes. While modern capacity-approaching codes achieve excellent performance at large block lengths, their efficiency at short and moderate lengths remains limited, especially under low-latency constraints. ...
Added: September 30, 2026
Djambong Tenkeu H., Institute for System Programming of the RAS, 2026.
Added: September 29, 2026
Ryskina H., Knyazev E., Вопросы биологической, медицинской и фармацевтической химии 2026 Т. 29 № 9 С. 84–91
Introduction. The active integration of rapidly developing omics and computer technologies in the 21st century has led to a breakthrough in understanding the principles of the functioning of living systems. One of the dynamically developing integrative areas in biology is biological modeling. The fundamental paradigm has been the methodology that allows for the prediction of ...
Added: September 29, 2026
Ivanashev Y., Доклады Российской академии наук. Математика, информатика, процессы управления (ранее - Доклады Академии Наук. Математика) 2026 Т. 529 С. 93–101
Язык L является нижним для релятивизируемого сложностного класса C, если CL=C. Для классов #P, GapP и SpanP известны точные нижние классы языков: Low(#P) = UP ∩ coUP, Low(GapP) = SPP и Low(SpanP) = NP ∩ coNP. В этой статье мы доказываем, что Low(TotP) = P, и приводим характеризации нижних классов функций для #P, GapP, TotP ...
Added: September 28, 2026
Piliugin L., Antropov A., Lobashev E. et al., Journal of Nuclear Materials 2026 Vol. 632 Article 156876
The effects of dislocations on the mobility of gas nanobubbles pinned to them are considered as novel unex- plored mechanisms of accelerated fission gas release and investigated using classical molecular dynamics of helium bubbles in FCC aluminum. Non-equilibrium methods are developed to calculate the mobility of a pinned bubble both along and across the dislocation ...
Added: September 28, 2026
Kashpurovich I., Oleynichenko A., Stegailov V., Supercomputing Frontiers and Innovations 2026 Vol. 13 No. 1 P. 52–73
We report a high-performance implementation of the resolution-of-the-identity Hartree–Fock method that fully exploits the permutational symmetry of three-center electron repulsion integrals (ERI). The present implementation adopts a hybrid MPI+OpenMP parallelization strategy. Two different algorithmic approaches (with and without the pre-transformation of ERIs) are compared. A custom data layout introduced previously is employed. Designed to efficiently ...
Added: September 28, 2026
Teregulov T., Loubenets E. R., / Series Quantum Physics "arXiv". 2026. No. 2609.31472.
We develop a new three-party quantum secret-sharing (QSS) protocol based on a three-qubit W state. This protocol encodes the secret-sequence bits using X gates and employs randomly selected Hadamard operations and measurement bases to generate information and security-test rounds. We evaluate the efficiency of the proposed protocol and analyze its security against an internal adversary ...
Added: September 28, 2026
Silakov D., Системный администратор 2026 С. 84–89
Social media users rarely think about what lies behind the beautiful facade of activity feeds, teeming with photos and video stories. However, the widespread popularity of such platforms generates a huge amount of all sorts of content that needs to be stored, processed quickly, and displayed, and in the era of AI, it also needs ...
Added: September 28, 2026
Prokhorov A., Wei Z., Sang H. et al., Journal of Productivity Analysis 2026 Vol. 65 P. 1–16
The stochastic frontier model (SFM) is widely employed in the analysis of productivity and efficiency, yet strict parametric forms, such as the Cobb-Douglas and Translog functions, are often assumed for modeling production, leading to potential misspecification issues. While semi- and nonparametric SFMs offer greater flexibility, they face challenges in imposing monotonicity and concavity to maintain ...
Added: September 28, 2026
Qian X., Guan X., Zhang B. et al., Journal of Global Optimization 2026
Inverse quickest path problem on networks ...
Added: September 27, 2026
Gureev M., Advanced Science 2026 P. 1–13
Targeted protein degradation represents a promising therapeutic strategy, yet its broader application is often limited by the scarcity of usable E3 ligases. Glutathione peroxidase 4 (GPX4) is a key target for inducing ferroptosis, but achieving sustained and potent inhibition remains challenging with conventional enzymatic inhibitors. Herein, we report the first small‐molecule GPX4 degraders that incorporate ...
Added: September 26, 2026
Switzerland: Springer Cham, 2026.
This volume gathers selected, peer-reviewed contributions presented at the 19th Conference of the International Federation of Classification Societies (IFCS 2026), held on 14–16 July 2026 in Milan, Italy. Reflecting the volume’s motto, Navigating Complexity – Statistical Methods, Data Analysis, and Machine Learning for Actionable Insights, the papers showcase modern methodologies and real-world applications designed to extract ...
Added: September 25, 2026
Kraevskiy A., Sokolovskiy E., Prokhorov A., Emerging Markets Review 2026 No. 74 P. 1–19
Financial markets of emerging economies are vulnerable to extreme and cascading information spillovers, surges, sudden stops and reversals. With this in mind, we develop a new online early warning system (EWS) to detect what is referred to as ‘concept drift’ in machine learning, as a ‘regime shift’ in economics and as a ‘change-point’ in statistics. ...
Added: September 25, 2026
Toukach P., Glycobiology 2023 Vol. 33 No. 7 P. 528–531
Carbohydrates structures in the Carbohydrate Structure Database have been referenced to glycoepitopes from the Immune Epitope Database allowing users to explore the glycan structures in the context of epitopes they contain. Starting with an epitope, one can figure out the glycans from other organisms that share the same structural fragment, and retrieve the associated taxonomical, ...
Added: October 9, 2024
Philip V.Toukach, Egorova K. S., Computational and Structural Biotechnology Journal 2022 Vol. 20 P. 5466–5476
In this paper, we present the results of a systematic statistical analysis of the fungal glycome in comparison with the prokaryotic and protistal glycomes as described in the scientific literature and presented in the Carbohydrate Structure Database (CSDB). The monomeric and dimeric compositions of glycans, their non-carbohydrate modifications, glycosidic linkages, sizes of structures, branching degree ...
Added: October 24, 2022
Philip V Toukach, Scherbinina S. I., Frank M., Glycobiology 2022 Vol. 32 No. 6 P. 460–468
Population analysis in terms of glycosidic torsion angles is frequently used to reveal preferred conformers of glycans. However, due to high structural diversity and flexibility of carbohydrates, conformational characterization of complex glycans can be a challenging task. Herein we present a conformation module of oligosaccharide fragments occurring in natural glycan structures developed on the platform ...
Added: October 24, 2022
Toukach PV, Egorova K. S., Scientific data 2022 Vol. 9 Article 131
The Carbohydrate Structure Database (CSDB, http://csdb.glycoscience.ru/) is a free curated depository storing various data on glycans of bacterial, fungal and plant origins. Currently, it maintains a close-to-full coverage on bacterial and fungal carbohydrates up to the year 2020. The CSDB web-interface provides free access to the database content and dedicated tools. Still, the number of ...
Added: June 8, 2022
Bochkov A., Toukach Ph., Journal of Chemical Information and Modeling 2021 Vol. 61 No. 10 P. 4940–4948
This article describes features, usage, and application of an CSDB/SNFG Structure Editor, a new online tool for quick and intuitive input of carbohydrate and derivative structures using Symbol Nomenclature for Glycans (SNFG). The Editor is built on a platform of the Carbohydrate Structure Database (CSDB) and relies on its online services via the dedicated web-API. ...
Added: October 14, 2021
Egorova K., Smirnova N., Toukach Ph., Glycobiology 2021 Vol. 31 No. 5 P. 524–529
We report the accomplishment of the first stage of the development of a novel manually curated database on glycosyltransferase (GT) activities, CSDB_GT. CSDB_GT (http://csdb.glycoscience.ru/gt.html) has been supplemented with GT activities from Saccharomyces cerevisiae. Now it provides the close-to-complete coverage on experimentally confirmed GTs from the three most studied model organisms from the three kingdoms: Plantae ...
Added: October 14, 2021