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  • ИСТОРИЯ И ПЕРСПЕКТИВЫ АТОМИСТИЧЕСКОГО МОДЕЛИРОВАНИЯ ПОЛИСАХАРИДОВ
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News
July 24, 2026
'Physics Is What the World Is Literally Built On'
Physicist Nina Dzhanayeva, recipient of a Vladimir Potanin Foundation scholarship, focuses her research on nanophotonics. In this interview for the HSE Young Scientists project, she discusses nanowells, scientific intuition, and how physics can help in making frangipane cream puffs.
July 20, 2026
Scientists Create Open Dataset for Studying Concentration
A team of Russian researchers, including scientists from HSE University–St Petersburg, has developed the first open multimodal dataset containing recordings of brain activity, heart function, and video observations to help researchers understand what happens in the human brain during deep concentration. In the future, the dataset could accelerate the development of neural interfaces, rehabilitation technologies, and AI systems. The article has been published in Scientific Data.
July 20, 2026
‘Science Is Universal-It Knows No Borders
Fuad Aleskerov, Tenured Professor and Director of the International Centre of Decision Choice and Analysis at HSE University, together with his colleagues, has developed methods of network analysis in bibliometrics that have made it possible to identify patterns in the appearance and citation of publications in academic journals, as well as their influence on each other. When one or a number of studies are frequently cited by a wide range of journals, this is an indicator that the research is of high quality. By contrast, extensive cross-citation within a limited group of journals increases the likelihood of identifying a network of predatory publications.

 

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ИСТОРИЯ И ПЕРСПЕКТИВЫ АТОМИСТИЧЕСКОГО МОДЕЛИРОВАНИЯ ПОЛИСАХАРИДОВ

Высокомолекулярные соединения. Серия С. 2023. Т. 65. № 1. С. 91–109.
Дещеня В. И., Kondratyuk N.

The history and prospects for the development of interatomic interaction potentials for the simulation of molecular systems and, in particular, polysaccharides are presented. Popular families of potentials, such as CHARMM, GROMOS, AMBER, and OPLS, are considered. Problems that limit the applicability of these models to sugar monomers have been recognized, which are poor reproducibility of experimentally determined properties and hyperaggregation at low concentrations. The development vectors of this area are also considered: the modification of nonbonded interactions and the use of polarizable potentials. Applications of the atomistic simulation of polysaccharides in actual fundamental and industrial problems are demonstrated using the example of cellulose. Important computational works are presented that have made a significant contribution to the understanding of the structure and processes occurring in a cellulose crystal. In addition, an overview is given of the currently available time scales and characteristic sizes of systems for simulation in the GROMACS, LAMMPS, OpenMM, and AMBER packages for the sucrose solution model.

Research target: Physics Computer Science
Language: Russian
DOI
Text on another site
Keywords: потенциал взаимодействия частицвязкостьклассическая молекулярная динамикаполисахариды
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