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  • ИНСТИТУТ БИОИНФОРМАТИКИ. СБОРНИК ТЕЗИСОВ 2020/21
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Subject
News
September 9, 2026
‘Balkan Hospitality Opens Doors: Studying Dialects on the Verge of Extinction
You cannot study spoken dialects from books. Instead, you need to go to a village, seek out its elders, and earn the trust of local residents before you can record hours of spontaneous stories. This is how Natalia Muravleva, Associate Professor at the Faculty of Humanities, conducts her research. Her internship in Serbia continued her long-standing study of dialects spoken by Macedonian settlers. In this interview, she discusses how diaspora cultural centres help researchers reach informants, why native speakers need to be interviewed only in their own language (otherwise, as she puts it, they may 'break'), and how a single field season helped her finalise her monograph. She also shares warm memories of autumn in Belgrade and of colleagues with whom grammar can be discussed in three languages at once.
September 9, 2026
Scientists Train Neural Network to Generate Process Plans from 3D Models
Researchers at the HSE FCS AI and Digital Science Institute have developed CAD2TechSpec, a framework that converts 3D models of mechanical parts into machining process plans—step-by-step instructions for machine tools. The solution aims to reduce the time required for the design and preparation of technical process documentation in mechanical engineering, aircraft manufacturing, and other high-tech industries. The study findings have been published in PeerJ Computer Science.
September 7, 2026
Biologists Discover 'Molecular Fingerprint' of Preeclampsia
Researchers at HSE University employed a new method to model hypoxia in placental cells during pregnancies complicated by preeclampsia and identified molecular markers of tissue hypoxia. Since hypoxia is one of the key mechanisms underlying preeclampsia, these findings are important for a more accurate and timely diagnosis of the disease and for the development of effective treatment methods. The paper has been published in Placenta.

 

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ИНСТИТУТ БИОИНФОРМАТИКИ. СБОРНИК ТЕЗИСОВ 2020/21

СПб. : Федеральное государственное автономное образовательное учреждение высшего образования "Санкт-Петербургский политехнический университет Петра Великого", 2021.

Bioinformatics Institute 2020/21. Project abstracts. Bioinformatics Summer School 2021. Abstracts.

Chapters
IMPROVE CASUAL GENE PRIORITIZATION BY PATIENT,S PHENOTYPE. IDENTIFICATION AND PARSING OF RELEVANT MENDELIAN DISEASE ARTICLES
Konstantinovskiy N., Smirnov D., Holger P., , in: ИНСТИТУТ БИОИНФОРМАТИКИ. СБОРНИК ТЕЗИСОВ 2020/21.: St. Petersburg: Федеральное государственное автономное образовательное учреждение высшего образования "Санкт-Петербургский политехнический университет Петра Великого", 2021. P. 24–24.
Added: August 9, 2021
AGE-RELATED CHANGES IN METHYLATION PATTERNS AT SITES OF ACTIVE HUMAN DNA REPLICATION
Konstantinovskiy N., Kirillova E., Cherniatchik R., , in: ИНСТИТУТ БИОИНФОРМАТИКИ. СБОРНИК ТЕЗИСОВ 2020/21.: St. Petersburg: Федеральное государственное автономное образовательное учреждение высшего образования "Санкт-Петербургский политехнический университет Петра Великого", 2021. P. 59–60.
Added: August 9, 2021
Research target: Biology Computer Science
Priority areas: IT and mathematics
Language: English
Keywords: bioinformaticsбиоинформатикавычислительная геномикаcomputational genomics
ИНСТИТУТ БИОИНФОРМАТИКИ. СБОРНИК ТЕЗИСОВ 2020/21
Similar publications
What Do Text-to-Image Models Know About the Languages of the World?
Фирсанова В. И., Journal of Mathematical Sciences 2024 Vol. 285 No. 1 P. 112–125
Text-to-image models use user-generated prompts to produce images. Such text-to-image models as DALL-E 2, Imagen, Stable Diffusion, and Midjourney can generate photorealistic or similar to human-drawn images. Apart from imitating human art, large text-to-image models have learned to produce combinations of pixels reminiscent of captions in natural languages. For example, a generated image might contain ...
Added: September 9, 2026
Разработка интерфейса виртуального ассистента преподавателя на основе технологий вызова функций и инженерии инструкций для больших языковых моделей
Фирсанова В. И., Человек: образ и сущность. Гуманитарные аспекты 2025 Vol. 2 No. 62 P. 203–214
Abstract. The paper highlights prompt engineering in academic setting to reduce plagiarism and increase students' interest. The research problem is the lack of a unified methodology for using artificial intelligence in education. The paper aims to create a generative artificial intelligence user interface, the Virtual Teaching Assistant. Teachers were interviewed, the first collection of presets ...
Added: September 9, 2026
Разработка методик на основе айтрекинга для диагностики когнитивных функций у детей
Ребрейкина А. Б., Liaukovich K., Современная зарубежная психология 2024 Т. 13 № 2 С. 33–43
Создание методик диагностики на основе анализа движений глаз является особенно актуальным для оценки когнитивных функций у детей, которые не могут дать речевой или моторный ответ в силу своего возраста или из-за нарушений развития. Для таких детей использование объективных методов оценки когнитивных функций на основе айтрекинга может стать полезным диагностическим инструментом, дополняющим традиционные поведенческие опросники и ...
Added: September 8, 2026
Развитие когнитивных функций детей с помощью методик, использующих видеоокулографию
Ребрейкина А. Б., Liaukovich K., Современная зарубежная психология 2023 Т. 12 № 4 С. 51–61
Активное развитие метода видеоокулографии, т. е. регистрации движений глаз, создает возможности для создания новых подходов для развития когнитивных функций и обучения. Методики, основанные на видеоокулографии, могут быть полезны не только для детей с серьезными нарушениями моторных функций, но и детей с нарушениями развития когнитивных функций, прежде всего внимания, так как контроль движений глаз тесно связан ...
Added: September 8, 2026
Вегетативные и поведенческие показатели при увеличении когнитивной нагрузки у здоровых добровольцев
Портнова Г. В., Liaukovich K., Васильева Л. Н. et al., Журнал высшей нервной деятельности им. И.П. Павлова 2022 Т. 72 № 4 С. 504–519
Когнитивная и эмоциональная нагрузка в ходе увеличения сложности задач приводит к активации различных звеньев вегетативной нервной системы и может сопровождаться как увеличением эффективности решения задач, так и способствовать дестабилизации эмоционального состояния и уменьшению продуктивности. Увеличение когнитивной нагрузки при условии высокой мотивации испытуемых является стрессовым фактором и выражается в различной реакции симпатического и парасимпатического звеньев в ...
Added: September 8, 2026
Анализ согласованности голосования стран ЕАЭС и ОДКБ в ГА ООН с помощью иерархической кластеризации
Вохминцев И. В., Вестник международных организаций: образование, наука, новая экономика 2026 Т. 21 № 2
The EAEU and the CSTO are Russia’s principal regional international organisations. Understanding, assessing, and analysing the foreign-policy positions of the countries that belong to them is a matter of the state’s national interests. This determines the purpose of the study: to identify the level and the form of cohesion in the voting of EAEU and ...
Added: September 7, 2026
DSCA-HLAII: A dual-stream cross-attention model for predicting peptide–HLA class II interaction and presentation
Shaitan A., Ke Y., Hongjun Y. et al., PLoS Computational Biology 2026 Article e1013836
The interaction between peptides and human leukocyte antigen class II (HLA-II) molecules plays a pivotal role in adaptive immune responses, as HLA-II mediates the recognition of exogenous antigens and initiates T cell activation through peptide presentation. Accurate prediction of peptide-HLA-II binding serves as a cornerstone for deciphering cellular immune responses, and is essential for guiding the optimization of antibody therapeutics. ...
Added: September 7, 2026
Salivary Antioxidant Capacity and Magnesium in Generalized Anxiety Disorder
Proskurnina E., Liaukovich K., Bychkovskaya L. et al., Metabolites 2023 Vol. 13 No. 1 P. 73
Added: September 7, 2026
Event-Related Potential Study of Recovery of Consciousness during Forced Awakening from Slow-Wave Sleep and Rapid Eye Movement Sleep
Liaukovich K., Sazhin S., Bobrov P. et al., International Journal of Molecular Sciences 2022 Vol. 23 No. 19 P. 11785
Added: September 7, 2026
Implicit auditory perception of local and global irregularities in passive listening condition
Liaukovich K., Ukraintseva Y., Martynova O., Neuropsychologia 2022 Vol. 165 P. 108129
Added: September 7, 2026
Pupillometry and autonomic nervous system responses to cognitive load and false feedback: an unsupervised machine learning approach
Alshanskaia E., Portnova G., Liaukovich K. et al., Frontiers in Neuroscience 2024 Vol. 18
Added: September 7, 2026
Oil Spill Segmentation in SAR Data Using ViT-UNet: Performance and Practical Insights
Зуенко Д. О., Trofimova E., Хайдарова И., IEEE Access 2026 Vol. 14 P. 121339–121357
Oil spill segmentation in Synthetic Aperture Radar (SAR) images is limited by noisy annotations in publicly available datasets and by architectural choices that interact with label quality in opposing directions. First, we introduce a manually refined version of the Deep-SAR Oil Spill (SOS) dataset, in which 36.25% of masks are corrected for false positives, missed ...
Added: September 7, 2026
Characteristics of the Frequency-Following Response to Changes in the Acoustic Parameters of a Speech Signal (Isolated Syllable)
Oknina L. B., Podlepich V. V., Sieber I. et al., Human Physiology 2026 Vol. 52 No. 3 P. 295–301
The aim of this study was to evaluate the potential use of the frequency-following response (FFR) for assessing preserved perception of simple speech stimuli in humans. To this end, event-related potentials (ERPs) elicited by isolated Russian syllables were recorded and analyzed in 29 healthy subjects in two frequency ranges, the standard range (1—40 Hz) and ...
Added: September 6, 2026
Что такое Свобода? Свобода воли, свободы личности, конституционная модель и законодательное регулирование
Момджян К. Х., Кржевов В. С., Poddiakov A. et al., М.: Новые печатные технологии, 2025.
При всей кажущейся ясности и недвусмысленности понятия «свобода» дать ему исчерпывающую научную дефиницию весьма затруднительно. У каждой отрасли знания свой подход к трактовке этого многоаспектного понятия. В ходе обсуждения, материалы которого вошли в настоящий сборник, свобода рассматривается с позиций философии, социологии, юриспруденции, психологии, нейрофизиологии и т.д. Участники дискуссии рассуждают о границах свободы воли и субъектности человека, о соотношении свободы и ...
Added: September 6, 2026
Event-related potentials and presaccadic activity in response to affective stimuli in participants with obsessive-compulsive disorder
Liaukovich K., Panfilova E., Khayrullina G. et al., International Journal of Psychophysiology 2025 Vol. 207 P. 112475
Added: September 5, 2026
The acoustic features of sincere joyful, sad, and fearful human non-verbal vocalizations and its effect on the emotional valence of cat’s meowing
Portnova G., Liaukovich K., Sharaev M., Cognitive Neurodynamics 2025 Vol. 19 Article 181
Added: September 5, 2026
Validation of the obsessive–compulsive disorder-triggering image set (OCD-TIS)
Liaukovich K., Bainbridge E., Khayrullina G. et al., Neuroscience and Behavioral Physiology 2026 Vol. 56 P. 10–19
Added: September 5, 2026
Commentary: Deep learning in obsessive-compulsive disorder: a narrative review
Kashevarova O., Portnova G., Khayrullina G. et al., Frontiers in Psychiatry 2026 Vol. 17 P. 1776019
Added: September 5, 2026
Scalable machine learning approach to disordered s-wave superconductors
Неверов В. Д., Красавин А. В., Vagov A. et al., Physical Review B: Condensed Matter and Materials Physics 2026 Vol. 113 P. 1–6
We develop a neural network approach to solve the self-consistent Bogoliubov-de Gennes equations in strongly disordered s-wave superconductors. The method accurately reproduces inhomogeneous gap distributions and generalizes to system sizes far larger than those used in training. It reduces computational scaling from O(N6 ) to O(N2), enabling quantitative analysis of percolation phenomena and the superconductor-insulator ...
Added: September 5, 2026
On the rate of Gaussian approximation for online linear regression problems
Sheshukova M., Durmus A., Khusainov M. et al., Statistics 2026 P. 1–25
In this paper, we consider the problem of Gaussian approximation for the online linear regression task. We derive the corresponding rates for the setting of a constant stepsize and study the explicit dependence of the convergence rate on the problem dimension d and quantities related to the design matrix. When the number of iterations n is known in advance, ...
Added: September 4, 2026
On calibration of remote sensing retrievals of ecosystem respiration (Reco) with tower measurements over,Russian forests and wetlands
Shabanov N., Kuricheva O., Kurbatova J. et al., / Series Working Papers SSRN "Department of Economics Ca’ Foscari University of Venice". 2026.
The carbon balance of an ecosystem is the difference between Gross Primary Productivity (GPP) and Ecosystem Respiration (Reco) as expressed by Net Ecosystem Exchange (NEE). While remote sensing retrievals of GPP have reached maturity, Reco estimation remains underexplored and ultimately cast bias on NEE. Here we present an end-to-end multi-scale analysis of the mechanism of ...
Added: August 21, 2026
Three Algorithms for Merging Hierarchical Navigable Small World Graphs
Ponomarenko A., / Series Computer Science "arxiv.org". 2025.
This paper addresses the challenge of merging hierarchical navigable small world (HNSW) graphs, a critical operation for distributed systems, incremental indexing, and database compaction. We propose three algorithms for this task: Naive Graph Merge (NGM), Intra Graph Traversal Merge (IGTM), and Cross Graph Traversal Merge (CGTM). These algorithms differ in their approach to vertex selection ...
Added: July 30, 2026
Growth in noncommutative algebras and entropy in derived categories
Piontkovski D., / Series arXiv "math". 2026.
A noncommutative projective variety is defined, following Artin and Zhang, by a graded coherent algebra 𝐴. The category of coherent sheaves is then the quotient qgr(𝐴) of the category of finitely presented graded modules by the subcategory of torsion modules. We consider the categorical and polynomial entropies of the Serre twist, that is, of the ...
Added: June 23, 2026
Multilinear nilalgebras and the Jacobian theorem
Piontkovski D., / Series arXiv "math". 2025.
If a symmetric multilinear algebra is weakly nil, then it is Engel. This result may be regarded as an infinite-dimensional analogue of the well-known Jacobian theorem, which states that if a polynomial mapping has a polynomial inverse, then its Jacobian matrix is invertible. This refines a theorem of Gerstenhaber and partially answers a question posed ...
Added: June 23, 2026
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