Towards a Unified Taxonomy of Biclustering Methods

Ignatov D. I., Watson B.

Being an unsupervised machine learning and data mining technique, biclustering and its multimodal extensions are becoming popular tools for analysing object-attribute data in different domains. Apart from conventional clustering techniques, biclustering is searching for homogeneous groups of objects while keeping their common description, e.g., in binary setting, their shared attributes. In bioinformatics, biclustering is used to find genes, which are active in a subset of situations, thus being candidates for biomarkers. However, the authors of those biclustering techniques that are popular in gene expression analysis, may overlook the existing methods. For instance, BiMax algorithm is aimed at finding biclusters, which are well-known for decades as formal concepts. Moreover, even if bioinformatics classify the biclustering methods according to reasonable domain-driven criteria, their classification taxonomies may be different from survey to survey and not full as well. So, in this paper we propose to use concept lattices as a tool for taxonomy building (in the biclustering domain) and attribute exploration as means for cross-domain taxonomy completion.

Keywords: biclustering, concept lattices, Taxonomy, attribute exploration

In book

RuZA 2015 Workshop. Proceedings of Russian and South African Workshop on Knowledge Discovery Techniques Based on Formal Concept Analysis (RuZA 2015). November 30 - December 5, 2015, Stellenbosch, South Africa

Vol. 1552. , Aachen: CEUR Workshop Proceedings, 2015.