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Математическое моделирование эволюции сферического клеточного агрегата в вязком матриксе. формирование клеточных структур
Российский журнал биомеханики. 2025. Т. 29. № 1. С. 119–130.
Logvenkov S. A.
Mathematical modeling of the development of spherically symmetrical structures in a cell aggregate surrounded by a viscous extracellular matrix was performed. The problem statement uses our previously developed multiphase continuum model of a biological medium formed by two actively interacting solid phases and a liquid. One of the solid phases is formed by cells, the other by the extracellular matrix. The change in the radius of the spherical surface bounding the aggregate is determined by conditions that take into account the redistribution of the load between the cell phase and the matrix phase on opposite sides of the aggregate boundary. The influence of active interactions of cells both among themselves and with the matrix, as well as the initial composition of the cell aggregate on the process of redistribution of the volume concentrations of cells and matrix, was studied. Processes associated with cell division and the production of proteolytic enzymes are not considered. Numerical calculations have shown that in the case of dominance of intercellular active mechanical interactions over cross interactions between cells and the matrix, only compaction of both loose and dense aggregates occurs ‑ non-invasive development. In the case of dominance of active cross interactions over intercellular ones, the scenario of the development of cell structures depends on the initial volume concentration of cell phase. In loose aggregates, a heterogeneous distribution of the concentration of the cell phase is formed, which under certain conditions can develop into a hollow cell structure. In dense aggregates, a dense core is formed and part of the cell phase detaches from the main mass.
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Ивченко В. С., Иевлева В. А., Matienko D. et al., Журнал технической физики 2026 № 9 С. 1738–1749
Задача о возбуждении бегущих фонон-поляритонных волн на поверхности полярного кристалла падающей извне световой волной (с частотой, близкой к частоте решеточных колебаний) решена теоретически только для бесконечной открытой поверхности кристалла. В случаях, когда часть поверхности покрыта металлической маской, препятствующей проникновению возбуждающего излучения к атомам среды, и эта маска имеет произвольную форму, общепризнанного решения неоднородной задачи нет. ...
Added: October 20, 2026
Logvenkov S. A., Известия РАН. Механика жидкости и газа 2026 № 3 С. 59–75
The problem of the evolution of cell volume fraction in a spherical aggregate composed of cells,
extracellular matrix, and fluid is considered. The aggregate is surrounded by extracellular matrix. The
problem formulation employs a multiphase model of a biological continuum, previously developed by the
author, consisting of two actively interacting solid phases and a fluid. The propagation of ...
Added: October 20, 2026
Lavrukhina E. A., Krasavin D. P., Krishtopenko S. S. et al., Physical Review B: Condensed Matter and Materials Physics 2026 Vol. 114 No. 22 Article 225414
We study coherent electric manipulation of magnetic field induced localized states at a double kink of a helical edge in a HgTe/CdHgTe quantum well. An in-plane magnetic field opens a gap in the one-dimensional (1D) edge spectrum, while changes in the edge orientation generate localized in-gap states at the kinks. We show that, for suitable ...
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Liaukovich K., Zhurnal Vysshei Nervnoi Deyatelnosti Imeni I.P. Pavlova 2026 Vol. 76 No. 5 P. 587–598
Added: October 19, 2026
Смерчанский П. С., Koledov V. V., Kamantsev A. P. et al., Physics of Metals and Metallography 2026 Vol. 127 No. 6-7 P. 689–693
Heusler alloys of the Ni2MnX family, where X = Ga, In, Sn, …, which have been shown to exhibit
giant magnetocaloric effect (MCE) and magnetically controlled shape memory effect due to thermoelastic
magnetostructural phase transition (MSPT), continue to attract attention. However, these functional properties are fully manifested in strong magnetic fields of at least several T. Currently, ...
Added: October 19, 2026
Nersisyan A., Frontiers in Molecular Biosciences 2026 Vol. 13 Article 1995001
Antiviral activity is commonly summarized using endpoint measures such as EC50 or EC90, yet these quantities emerge from a dynamic biological system and depend on viral replication kinetics, host-cell properties, experimental design, and the assay used to quantify infection. Infectious-virus titers, viral RNA, infected-cell fractions, viability measurements, and immune readouts capture different components of the ...
Added: October 15, 2026
Тукачев Н. В., Bataev V., Abramenkov A. et al., Computational and Theoretical Chemistry 2016 No. 1080 P. 23–32
Electronic state calculations, such as equilibrium geometry parameters, harmonic vibrational frequencies and potential barriers to conformational transitions (as well as conformer energy differences in excited states), using ab initio methods, such as MP2, CCSD(T), CASSCF, CASPT2 and MRCI, were carried out on the formamide molecule in the ground (S0) and the lowest excited singlet (S1) ...
Added: October 14, 2026
Тукачев Н. В., Bataev V. А., Godunov I. А., Journal of Quantitative Spectroscopy and Radiative Transfer 2016 Vol. 177 P. 291–300
For conformers of the N-methylformamide (HCONHCH3) molecule, calculations of equilibrium geometry parameters, harmonic vibration frequencies, energy differences and potential barriers to conformational transitions were performed in the ground (S0) and lowest excited singlet (S1) and triplet (T1) electronic states. In the S0 state, the molecule exists in trans and cis stable conformations (having Cs symmetry). ...
Added: October 14, 2026
Тукачев Н. В., Bataev V. А., Godunov I. А., Journal of Quantitative Spectroscopy and Radiative Transfer 2017 Vol. 192 P. 30–41
For acetamide molecule (CH3CONH2) in the ground (S0) and lowest excited singlet (S1) and triplet (T1) electronic states calculations of equilibrium geometry parameters, harmonic vibrational frequencies and barriers to conformational transitions (also conformer energy differences in excited states) using following ab initio methods: MP2, CCSD(T), CASSCF, CASPT2 and MRCI were performed. One-, two- and three-dimensional ...
Added: October 14, 2026
Тукачев Н. В., Bataev V. A., Godunov I. A., Computational and Theoretical Chemistry 2017 Vol. 1113 P. 82–93
Equilibrium geometry parameters, harmonic vibrational frequencies and barriers to conformational transitions and conformer energy differences for N-methylacetamide (CH3CONHCH3) molecule in S0, S1 and T1 electronic states were calculated in MP2 (S0) and CASPT2 (S1, T1) levels of theory. It is known that there are two planar (or effectively planar) conformers of N-methylacetamide in the ground ...
Added: October 14, 2026
Тукачев Н. В., Maslennikov D., Sosorev A. et al., The Journal of Physical Chemistry Letters 2019 Vol. 10 No. 12 P. 3232–3239
Conformational space of polyphenylenevinylene oligomers is systematically investigated computationally at energies relevant for room temperature dynamics in a solvent and in a solid state. Our calculations show that optimal oligomer structures are essentially planar. However, lack of a deep minimum at the planar geometry allows for large molecular deformations even at very low temperatures. At ...
Added: October 14, 2026
Тукачев Н. В., Akkuratov A., Kuznetsov I. et al., Synthetic Metals 2020 Vol. 259 Article 116231
Four new conjugated polymers based on benzodithiophene, thiophene and 2,1,3-benzothiadiazole or 5,6-difluoro-2,1,3-benzothiadiazole were synthesized and investigated as absorber materials for organic photovoltaics. The effect of (bi)thiophene π-spacers and fluorine substitution on the physicochemical and optoelectronic properties of the polymers was revealed and correlations were drawn with their electrical characteristics in organic solar cells. In particular, ...
Added: October 14, 2026
Тукачев Н. В., Nuraliev M., Parashchuk O. et al., Journal of Chemical Physics 2020 Vol. 153 No. 17 Article 174303
Electron–phonon interaction strongly affects and often limits charge transport in organic semiconductors (OSs). However, approaches to its experimental probing are still in their infancy. In this study, we probe the local electron–phonon interaction (quantified by the charge-transfer reorganization energy) in small-molecule OSs by means of Raman spectroscopy. Applying density functional theory calculations to four series ...
Added: October 14, 2026
Тукачев Н. В., Klimovich I., Prudnov F. et al., Dyes and Pigments 2021 Vol. 185 Article 108899
A series of ten conjugated polymers incorporating in their molecular frameworks extended DADAD building blocks with thiophene donor (D) and either benzotriazole, benzoxadiazole, benzothiadiazole, difluorobenzothiadiazole or quinoxaline acceptor (A) units were synthesized and characterized. The optoelectronic properties of new polymers were computed and experimentally investigated revealing a good relationship, which can guide further rational design ...
Added: October 14, 2026
Тукачев Н. В., Sosorev A., Parashchuk O. et al., Physical Chemistry Chemical Physics 2021 Vol. 23 No. 29 P. 15485–15491
Dynamic disorder manifested in fluctuations of charge transfer integrals considerably hinders charge transport in high-mobility organic semiconductors. Accordingly, strategies for suppression of the dynamic disorder are highly desirable. In this study, we suggest a novel promising strategy for suppression of dynamic disorder—tuning the molecular electrostatic potential. Specifically, we show that the intensities of the low-frequency ...
Added: October 14, 2026
Тукачев Н. В., González-Jiménez M., Ramakrishnan G. et al., Physical Chemistry Chemical Physics 2021 Vol. 23 No. 23 P. 13250–13260
Low-frequency vibrations play an essential role in biomolecular processes involving DNA such as gene expression, charge transfer, drug intercalation, and DNA–protein recognition. However, understanding the vibrational basis of these mechanisms relies on theoretical models due to the lack of experimental evidence. Here we present the low-frequency vibrational spectra of G-quadruplexes (structures formed by four strands ...
Added: October 14, 2026
Logvenkov S. A., RUSSIAN JOURNAL OF BIOMECHANICS 2025 Vol. 29 No. 1 P. 101–111
Mathematical modeling of the development of spherically symmetrical structures in a cell aggregate surrounded by a viscous extracellular matrix was performed. The problem statement uses our previously developed multiphase continuum model of a biological medium formed by two actively interacting solid phases and a liquid. One of the solid phases is formed by cells, the ...
Added: May 14, 2025
Logvenkov S. A., Известия РАН. Механика жидкости и газа 2024 № 3 С. 3–19
The extent of participation of mechanisms such as the active interactions of cells with each other and with the extracellular matrix, the increased hydrostatic pressure in intercellular fluid, and enzymatic activity of cells that lead to the destruction of the extracellular matrix in the process of formation of cavities in clusters of cells formed during ...
Added: January 21, 2025
S. A. Logvenkov, ISSN 0015-4628, Fluid Dynamics, © Pleiades Publishing, Ltd., 2024 Vol. 59 No. 3 P. 377–391
The extent of participation of mechanisms such as the active interactions of cells with each
other and with the extracellular matrix, the increased hydrostatic pressure in intercellular fluid, and
enzymatic activity of cells that lead to the destruction of the extracellular matrix in the process of formation
of cavities in clusters of cells formed during cluster vasculogenesis is ...
Added: September 3, 2024
S. A. Logvenkov, ISSN 0015-4628, Fluid Dynamics, © Pleiades Publishing, Ltd. 2023 Vol. 58 No. 2 P. 165–175
The cell motion is at the bottom of many biological phenomena. An important role in controlling
cell motions is played by active stresses developing in biological tissues as a result of mechanical
intercellular interactions. An investigation of the evolution of the mixtures of cells of different
types forming cell aggregates shows that active intercellular force interactions lead to ...
Added: October 20, 2023
Logvenkov S. A., Известия РАН. Механика жидкости и газа 2023 № 2 С. 9–19
The cell motion is at the bottom of many biological phenomena. An important role in controlling cell motions is played by active stresses developing in biological tissues as a result of mechanical intercellular interactions. An investigation of the evolution of the mixtures of cells of different types forming cell aggregates shows that active intercellular force ...
Added: May 13, 2023