Выявление молекулярных основ взаимодействия белков в мембране с помощью компьютерного моделирования
Basing on the information about the structure of the solution and asymptotic estimates in the problem of steady flow across the root, a system of algebraic relations similar to the commonly used compartment models is obtained. As compared with these, the method proposed has an important advantage making it possible to take into account the characteristic features of the anatomical structure of the root and the non-uniformity of the parameter distribution over its cross-section. This enables us to formulate simple finite relationships fitting with sufficient accuracy with the numerical solution obtained within the framework of the continuum model. The application of the approach proposed to solving specific problems is simpler than both the numerical solution based on the continuum model and the solution obtained by asymptotic methods.
In this work, we perform coexistence simulations of methane hydrates for pressures up to 5000 bar for different water models. We calculate the kinetic stability boundary of the superheated metastable sI structure and analyze the effects of the heating rate, system size and cage occupancy. We also report molecular dynamics simulation of several possible structuresfor the new hydrogen hydrate clathrate. We show the strength of molecular simulation as a supplement tool for the analysis of experimental data. © 2015 by Nova Science Publishers, Inc. All rights reserved.
Cooling of tokamak boundary plasma owing to radiation of non-fully stripped lithium ions is considered as a promising way for protection of plasma facing elements (PFE) in tokamak. It may be effectively realized when the main part of lithium ions are involved in the closed circuit of migration between plasma and PFE surface. Such an approach may be implemented with the use of lithium device whose hot (500-600 °C) area to be effected by plasma serves as a Li-emitter and the cold part (∼180 °C) as a Li-collector in the shadow. Capillary-pore system (CPS) provides the returning of collected and condensed lithium to emitting zone by capillary forces. The main goals of the last T-11M lithium experiments were investigating Li ions transport in the tokamak scrape of layer (SOL) and their collecting by different kinds of limiters. The design of devices based on lithium CPS with different ratio of emitting/collecting area is the main subject of this paper. © 2015 The Authors.
The quantum nuclear effects are studied in water using centroid molecular dynamics (CMD) method. The aim is the calibration of CMD implementation in LAMMPS. The calculated intramolecular energy, atoms gyration radii and radial distribution functions are shown in comparison with previous works. The work is assumed to be the step toward to solution of the discrepancy between the simulation results and the experimental data of liquid n-alkane properties in our previous works.
It is well recognized that excessive ice accumulation at low-temperature conditions can cause significant damage to civil infrastructure. The passive anti-icing surfaces provide a promising solution to suppress ice nucleation and enhance ice removal. However, despite extensive efforts, it remains a challenge to design anti-icing surfaces with low ice adhesion. Using all-atom molecular dynamics (MD) simulations, we show that surfaces with single-walled carbon nanotube array (CNTA) significantly reduce ice adhesion due to the extremely low solid areal fraction. It was found that the CNTA surface exhibits up to a 45% decrease in the ice adhesion strength in comparison with the atomically smooth graphene surface. The details of the ice detachment from the CNTA surface were examined for different water-carbon interaction energies and temperatures of the ice cube. Remarkably, the results of MD simulations demonstrate that the ice detaching strength depends linearly on the ratio of the ice-surface interaction energy and the ice temperature. These results open the possibility for designing novel robust surfaces with low ice adhesion for passive anti-icing applications.