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Article

Modeling Evolution on Nearly Neutral Network Fitness Landscapes

Journal of the Physical Society of Japan. 2017. Vol. 86. P. 084801-1-084801-6.
Yakushkina T., Saakian D. B.

To describe virus evolution, it is necessary to define a fitness landscape. In this article, we consider the microscopic models with the advanced version of neutral network fitness landscapes. In this problem setting, we suppose a fitness difference between one-point mutation neighbors to be small. We construct a modification of the Wright–Fisher model, which is related to ordinary infinite population models with nearly neutral network fitness landscape at the large population limit. From the microscopic models in the realistic sequence space, we derive two versions of nearly neutral network models: with sinks and without sinks. We claim that the suggested model describes the evolutionary dynamics of RNA viruses better than the traditional Wright–Fisher model with few sequences.