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Modeling Evolution on Nearly Neutral Network Fitness Landscapes
Journal of the Physical Society of Japan. 2017. Vol. 86. P. 084801-1–084801-6.
Yakushkina T., Saakian D.
To describe virus evolution, it is necessary to define a fitness landscape. In this article, we consider the microscopic models with the advanced version of neutral network fitness landscapes. In this problem setting, we suppose a fitness difference between one-point mutation neighbors to be small. We construct a modification of the Wright–Fisher model, which is related to ordinary infinite population models with nearly neutral network fitness landscape at the large population limit. From the microscopic models in the realistic sequence space, we derive two versions of nearly neutral network models: with sinks and without sinks. We claim that the suggested model describes the evolutionary dynamics of RNA viruses better than the traditional Wright–Fisher model with few sequences.
Priority areas:
mathematics
Language:
English
Жакупов О. Б., European Journal of Mathematics 2025 Vol. 11 Article 84
We provide examples of smooth three-dimensional Fano complete intersections of degree 2, 4, 6, and 8 that have absolute coregularity 0. Considering the main theorem of Avilov, Loginov, and Przyjalkowski (CNTP 18:506–577, 2024) on the remaining 101 families of smooth Fano threefolds, our result implies that each family of smooth Fano threefolds has an element of absolute ...
Added: May 18, 2026
Smirnov A., Kurtina D. A., Saitov S. R. et al., Optical Materials: X 2026 Vol. 30 Article 100441
Chiral semiconductor nanostructures and nanoparticles are promising materials for applications in biological sensing, enantioselective separation, photonics, and spin-polarized devices. Here we performed a detailed analysis of optical properties of chiral CdSe nanoplatelets with thickness of 2 and 3 monolayers (ML) with Nacetyl-L-cysteine ligands. We studied the absorption spectra peculiarities, analyzed time-resolved photoluminescence and investigated circular ...
Added: May 18, 2026
Smirnov A., Mantsevich V. N., Saitov S. R. et al., Journal of Applied Physics 2026 Vol. 139 Article 185702
This work presents a comprehensive investigation into the temperature-dependent thermally stimulated conductivity and photoconductivity of vacuum-annealed thin films based on core–shell CdSe/CdS nanoplatelets passivated with oleic acid ligands. Controlled thermal annealing under vacuum conditions leads to a substantial increase in both dark and photoinduced conductivity, which is primarily attributed to partial desorption of the ligands. ...
Added: May 18, 2026
Масютин Д. А., Moiseev E., Komarov S. et al., Письма в Журнал технической физики 2026 Т. 52 № 7 С. 27–30
Исследованы инжекционные полупроводниковые микролазеры с кольцевым резонатором радиусом 15 мкм с несимметричным расположением внутреннего отверстия резонатора. Показано, что асимметрия обеспечивает формирование в диаграмме направленности двух лепестков излучения, разориентированных на 50° относительно оси смещения внутреннего отверстия. Измеренная добротность резонаторов сопоставима с добротностью дисковых резонаторов и находится на уровне ∼ 10^6. ...
Added: May 18, 2026
The Journal of Physical Chemistry Letters 2026 Vol. 17 No. 18 P. 5386–5394
We demonstrate and rationalize the effect of Au nanoparticles (NPs) on the hierarchical g-C3N4/CeO2 heterojunction. g-C3N4/CeO2 decorated with monodispersed plasmonic Au NPs was synthesized. Detailed analyses showed that CeO2 nanocubes and monodispersed Au NPs were evenly distributed over the 2D g-C3N4 surface, forming a robust interface enriched with abundant active sites. The structure enabled efficient separation of photogenerated charge ...
Added: May 16, 2026
Das A., Paul R., Sharma N. et al., Colloids and Surfaces A: Physicochemical and Engineering Aspects 2026 Vol. 728 P. 138830
Niobium-doped TiO2 (Nb-TiO2), demonstrates dual functionality as an efficient photocatalyst for dye degradation and a promising photoelectrocatalyst for water oxidation. Nb incorporation via a facile hydrothermal method was confirmed by XRD (Rietveld refinement), XPS, TEM, FT-IR, Raman, and BET analyses, indicating successful lattice doping and structural modification. Photocatalytic dye degradation experiments were conducted using a model ...
Added: May 16, 2026
Lerman L. M., Turaev D. V., Regular and Chaotic Dynamics 2026 Vol. 31 No. 3 P. 349–369
We show that bifurcations of four-dimensional symplectic diffeomorphisms with a quadratic homoclinic tangency to a saddle periodic orbit with real multipliers produce 2-elliptic periodic orbits if the tangency is not partially hyperbolic. We show that a normal form for the rescaled first-return maps near such tangency is given by a four-dimensional symplectic H´enonlike map and study bifurcations of the ...
Added: May 15, 2026
Aleskerov F. T., Yakuba V. I., Khutorskaya O. et al., Springer, 2026.
The book contains new models of bibliometric analysis based on centrality measures in network analysis, pattern analysis and stability analysis. A distinctive feature of these centrality measures is that they account for the parameters of vertices and group influence of vertices to a vertex. This reveals specific groups of publications, authors, terms, journals and affiliations ...
Added: May 15, 2026
Kuptsov P., Panyushev A., Stankevich N., Chaos 2026 Vol. 36 No. 5 Article 053138
We develop a machine-learning approach to reproduce the behavior of two versions of the van der Pol oscillator exhibiting a subcritical Andronov–Hopf bifurcation, with or without a codimension-2 Bautin point. We construct a neural-network model that functions as a recur rent map and train it on short segments of oscillator trajectories. The results show that, ...
Added: May 15, 2026
Kolokolov I., Lebedev V., Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 2026 Vol. 113 Article 054117
We theoretically investigate the correlation functions of the phase of a light wave propagating through a
turbulent medium. We use an equation for the logarithm of a wave packet envelope, which includes a secondorder
nonlinear term. Based on this equation, we develop a diagrammatic technique to calculate corrections
to the correlation function obtained in the linear approximation. We ...
Added: May 15, 2026
Гущина В. А., / Series chemrxiv-2023-vpzhz-v2 "ChemRxiv". 2023.
All-inorganic perovskite CsPbBr3 and Cs4PbBr6 nanoparticles are being intensively studied due to their unique properties and wide range of applications; however, however, the nature of their optical properties is not yet fully understood due to the difficulty of synthesis of singlephase nanoparticles. In this article we describe the features of the synthesis of single-phase particles ...
Added: May 14, 2026
Dorovskiy A., / Series arXiv "math". 2026.
In this paper the structural stability of generic families of vector fields of the PC-HC class on the two-dimensional sphere is proved. A classification of these families up to moderate equivalence in neighborhoods of their large bifurcation supports is presented, based on such invariants as the configuration and the characteristic set. The realization lemma is proved. ...
Added: May 14, 2026
Гущина В. А., Mendeleev Communications 2025 Vol. 35 No. 2 P. 193–195
All-inorganic perovskite CsPbBr3 and Cs4PbBr6 nanoparticles are intensively studied for their unique optical properties, though synthesizing single-phase nanoparticles has posed challenges. Detailed synthesis method of CsPbBr3 and Cs4PbBr6 single-phase nanoparticles and their chemical and phase analysis are described. Distinctive optical characteristics, such as photoluminescence, optical band gap and the Urbach tail region, are revealed and explained within the current ...
Added: May 14, 2026
Гущина В. А., Physics of Complex Systems, Russia 2026 Vol. 7 No. 1 P. 3–15
Heterostructures based on ZnO nanorods and CsPbBr3 nanocrystals were investigated for their potential as semiconductor SERS substrates. We found that ZnO morphology governs the efficiency of interfacial energy transfer, leading to enhanced photoluminescence under 390 nm excitation and a noticeable reduction of the bandgap in the composites. Raman analysis revealed a pronounced intensity enhancement and ...
Added: May 14, 2026
Lebedev V., Journal of Mathematical Analysis and Applications 2026 Vol. 563 No. 2 Article 130787
It is known that for every continuous real-valued
function $f$ on the circle $\mathbb T=\mathbb R/2\pi\mathbb Z$ there exists a
change of variable, i.e., a self-homeomorphism $h$ of $\mathbb T$, such that
the superposition $f\circ h$ is in the Sobolev space $W_2^{1/2}(\mathbb T)$.
We obtain new results on simultaneous improvement of functions by a single
change of variable in relation ...
Added: May 14, 2026
Taletskii D., / Series arXiv "math". 2026.
A vertex subset of a graph is called a \textit{distance-$k$ independent set} if the distance between any two of its distinct vertices is at least $k + 1$. For all $n,k \geq 1$, we determine the minimum possible number of inclusion-wise maximal distance-$k$ independent sets among all $n$-vertex trees. It equals~$n$ if $n \leq k ...
Added: May 1, 2026
Ovcharenko M., / Series arXiv "math". 2026.
We introduce an explicit class of tempered Laurent polynomials in the sense of Villegas and Doran--Kerr in n⩽4 variables including all Landau--Ginzburg models for smooth Fano threefolds with very ample anticanonical class. We check that it contains Landau--Ginzburg models for various Fano fourfolds which are complete intersections in smooth toric varieties and Grassmannians of planes, ...
Added: April 30, 2026
Zlotnik Alexander, / Series arXiv "math". 2026. No. 2602.03481v1.
We deal with the global in time weak solutions to the 1D compressible Navier-Stokes system of equations for large discontinuous initial data and nonhomogeneous boundary conditions of three standard types. We prove the Lipschitz-type continuous dependence of the solution $(\eta,u,\theta)$, in a norm slightly stronger than $L^{2,\infty}(Q)\times L^2(Q)\times L^2(Q)$, on the initial data $(\eta^0,u^0,e^0)$ in a ...
Added: April 18, 2026
Medvedev V., / Series arXiv "math". 2026.
We investigate the interplay between the dimension of the space of static potentials and the geometric and topological structure of the underlying static three-manifold. A partial classification of boundaryless static manifolds is obtained in terms of this dimension. We also treat the case of static manifolds with boundary. In particular, we prove that if a ...
Added: April 3, 2026
Gabdullin N., Androsov I., / Series Computer Science "arxiv.org". 2026.
Label prediction in neural networks (NNs) has O(n) complexity proportional to the number of classes. This holds true for classification using fully connected layers and cosine similarity with some set of class prototypes. In this paper we show that if NN latent space (LS) geometry is known and possesses specific properties, label prediction complexity can ...
Added: April 2, 2026
Kolesnikov A., / Series arXiv "math". 2025.
We study Blaschke--Santal{ó}-type inequalities for N>=2 sets (functions) and a special class of cost functions. In particular, we prove new results about reduction of the maximization problem for the Blaschke--Santal{ó}-type functional to homogeneous case (functional inequalities on the sphere) and extend the symmetrization argument to the case of N>2 sets.
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Added: February 13, 2026
Sorokin K., Beketov M., Онучин А. et al., / arxiv.org. Серия cs.SI "Social and Information Networks ". 2025.
Community detection in complex networks is a fundamental problem, open to new approaches in various scientific settings. We introduce a novel community detection method, based on Ricci flow on graphs. Our technique iteratively updates edge weights (their metric lengths) according to their (combinatorial) Foster version of Ricci curvature computed from effective resistance distance between the ...
Added: January 15, 2026
Gaianov N., Parusnikova A., / Cornell University. Серия math "arxiv.org". 2025.
An algebraic q-difference equation is considered. A sufficient condition for the existence of a formal power-logarithmic expansion of a solution to such an equation in the neighborhood of zero is proposed. An example of applying this sufficient condition for constructing a formal expansion of a solution to a certain q-difference analogue of the fifth Painlevé equation ...
Added: December 25, 2025
Popov V., / Series arXiv "math". 2025. No. 2502.01539.
We prove that the variety of flexes of algebraic curves
of degree 3 in the projective plane is an ideal theoretic complete
intersection in the product of a two-dimensional and a nine-dimensional projective spaces. ...
Added: December 16, 2025