Sergey I. Nikolenko

Publications⁸⁸

• Article Alimova I., Tutubalina E., Nikolenko S. I. Cross-Domain Limitations of Neural Models on Biomedical Relation Classification // IEEE Access. 2022. Vol. 10. P. 1432-1439. doi
• Chapter Alekseev A., Tutubalina E., Kwon S., Nikolenko S. I. Near-Zero-Shot Suggestion Mining with a Little Help from WordNet, in: Analysis of Images, Social Networks and Texts. 10th International Conference, AIST 2021, Tbilisi, Georgia, December 16–18, 2021, Revised Selected Papers / Ed. by E. Burnaev, D. I. Ignatov, S. Ivanov, M. Khachay, O. Koltsova, A. Kutuzov, Sergei O. Kuznetsov, N. Loukachevitch, A. Napoli, A. Panchenko, P. M. Pardalos, J. Saramäki, A. Savchenko, E. Tsymbalov, E. Tutubalina. Cham : Springer, 2022. doi P. 23-36. doi
• Article Соколова А. Д., Савченко А. В., Николенко С. И. Поиск редких данных в задаче распознавания лиц на изображениях // Компьютерная оптика. 2022. Т. 46. № 5. С. 801-807. doi
• Article Chuprikov P., Davydov A., Kogan K., Nikolenko S. I., Sirotkin A. Formalization and taxonomy of compute-aggregate problems for cloud computing applications // Computer Networks. 2021. Vol. 189. Article 107915. doi
• Article Tutubalina E., Алимова И. С., Мифтахутдинов З., Sakhovskiy A., Malykh V., Nikolenko S. I. The Russian Drug Reaction Corpus and Neural Models for Drug Reactions and Effectiveness Detection in User Reviews // Bioinformatics. 2021. Vol. 37. No. 2. P. 243-249. doi
• Article Ovchinnikova K., Lachlan S., Rakhlin A., Nikolenko S. I., Alexandrov T. ColocML: machine learning quantifies co-localization between mass spectrometry images // Bioinformatics. 2020. P. 1-10. doi
• Chapter Golovanov S., Tselousov A., Rauf Kurbanov, Sergey I Nikolenko. Lost in Conversation: A Conversational Agent Based on the Transformer and Transfer Learning, in: The NeurIPS '18 Competition: From Machine Learning to Intelligent Conversations. Springer, 2020. doi P. 295-315. doi
• Article Polykovskiy D., Zhebrak A., Sanchez-Lengeling B., Golovanov S., Tatanov O., Belyaev S., Kurbanov R., Artamonov A., Aladinskiy V., Veselov M., Kadurin A., Johansson S., Chen H., Nikolenko S. I., Aspuru-Guzik A., Zhavoronkov A. Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models // Frontiers in Pharmacology. 2020. Vol. 11. P. 1-10. doi
• Chapter Shenbin I., Alekseev A., Tutubalina E., Malykh V., Nikolenko S. I. RecVAE: A new variational autoencoder for top-n recommendations with implicit feedback, in: WSDM '20: Proceedings of the 13th International Conference on Web Search and Data Mining. Association for Computing Machinery (ACM), 2020. doi P. 528-536. doi
• Article Kogan K., Menikkumbura D., Petri G., Noh Y., Nikolenko S. I., Sirotkin A., Eugster P. Towards Software-Defined Buffer Management // IEEE/ACM Transactions on Networking. 2020. Vol. 28. No. 5. P. 2337-2349. doi
• Chapter Demianiuk V., Nikolenko S. I., Kogan K. Approximate Classifiers with Controlled Accuracy, in: IEEE INFOCOM 2019 - IEEE Conference on Computer Communications. P. : IEEE, 2019. P. 2044-2052. doi
• Chapter Golovanov S., Rauf Kurbanov, Sergey Nikolenko, Truskovskyi K., Tselousov A., Wolf T. Large-scale transfer learning for natural language generation, in: Proceedings of the 57th Annual Meeting of the Association for Computational Linguistics. Association for Computational Linguistics, 2019. P. 6053-6058. doi
• Article Eugster P., Kesselman A., Kogan K., Nikolenko Sergey, Sirotkin A. Admission control in shared memory switches // Journal of Scheduling. 2018. Vol. 21. No. 5. P. 533-543. doi
• Chapter Golovanov S., Rauf Kurbanov, Artamonov A., Davydow A., Sergey Nikolenko. Building detection from satellite imagery using a composite loss function, in: 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW). IEEE, 2018. doi P. 219-222. doi
• Article Chuprikov P., Nikolenko S. I., Davydow A., Kogan K. Priority Queueing for Packets with Two Characteristics // IEEE Transactions on Networking. 2018. Vol. 26. No. 1. P. 342-355. doi
• Book Analysis of Images, Social Networks and Texts. 5th International Conference, AIST 2016, Yekaterinburg, Russia, April 7-9, 2016, Revised Selected Papers. Communications in Computer and Information Science / Ed. by D. I. Ignatov, M. Y. Khachay, V. Labunets, N. V. Loukachevitch, S. I. Nikolenko, A. Panchenko, A. Savchenko, K. V. Vorontsov. Vol. 661. Switzerland : Springer, 2017. doi
• Chapter Tutubalina E., Nikolenko S. I. Automated Prediction of Demographic Information from Medical User Reviews, in: Mining Intelligence and Knowledge Exploration. 4th International Conference, MIKE 2016, Mexico City, Mexico, November 13 - 19, 2016, Revised Selected Papers Issue 10089. Cham : Springer, 2017. doi P. 174-184. doi
• Chapter Tutubalina E., Nikolenko S. I. Constructing Aspect-Based Sentiment Lexicons with Topic Modeling, in: 5th Conference on Analysis of Images, Social Networks, and Text (AIST 2016). Springer, 2017. (in press)
• Chapter Koltsova O., Nikolenko S. I., Alexeeva S. V., Nagornyy O. S., Koltsov S. Detecting interethnic relations with the data from social media, in: Digital Transformation & Global Society: Second International Conference, DTGS 2017, St. Petersburg, Russia, June 21-23, 2017, Revised Selected Papers. Springer, 2017. P. 16-30. doi
• Article Kogan K., Nikolenko S. I., Eugster P., Shalimov A., Rottenstreich O. Efficient FIB Representations on Distributed Platforms // IEEE Transactions on Networking. 2017. Vol. 25. No. 6. P. 3309-3322. doi
• Article Palmer A., Phapale P., Chernyavsky I., Lavigne R., Fay D., Tarasov A., Kovalev V., Fuchser J., Nikolenko S. I., Pineau C., Becker M., Alexandrov T. FDR-controlled metabolite annotation for high-resolution imaging mass spectrometry // Nature Methods. 2017. No. 14. P. 57-60. doi
• Article Eugster P., Kogan K., Nikolenko S. I., Alevander V. Sirotkin. Heterogeneous packet processing in shared memory buffers // Journal of Parallel and Distributed Computing. 2017. Vol. 99. P. 1-13. doi
• Article Koltsova O., Svetlana Alexeeva, Sergey Nikolenko, Koltsov M. Measuring Prejudice and Ethnic Tensions in User-Generated Content // Annual Review of CyberTherapy and Telemedicine. 2017 (in press)
• Chapter Nikolenko S. I., Kogan K., Fernandez-Anta A. Network simplification preserving bandwidth and routing capabilities, in: Proceedings of the 36th IEEE Conference on Computer Communications (INFOCOM 2017). Atlanta : IEEE, 2017. P. 1-9. doi
• Article Kogan K., Lopez-Ortiz A., Nikolenko S. I., Alexander V. Sirotkin. The impact of processing order on performance: A taxonomy of semi-FIFO policies // Journal of Computer and System Sciences. 2017. Vol. 88. P. 220-235. doi
• Chapter Davydow A., Chuprikov P., Nikolenko S. I., Kogan K. Throughput optimization with latency constraints, in: Proceedings of the 36th IEEE Conference on Computer Communications (INFOCOM 2017). Atlanta : IEEE, 2017. P. 1-9. doi
• Article Sergey Nikolenko, Sergei Koltcov, Olessia Koltsova. Topic modelling for qualitative studies // Journal of Information Science. 2017. Vol. 43. No. 1. P. 88-102. doi
• Chapter Alekseyev A., Nikolenko S. I. User Profiling in Text-Based Recommender Systems Based on Distributed Word Representations, in: 5th Conference on Analysis of Images, Social Networks, and Text (AIST 2016). Springer, 2017. (in press)
• Article Svetlana S. Bodrunova, Koltsova O., Sergey Koltcov, Sergey Nikolenko. Who’s Bad? Attitudes Toward Resettlers From the Post-Soviet South Versus Other Nations in the Russian Blogosphere // International Journal of Communication. 2017. Vol. 11. P. 3242-3264.
• Article Kadurin A., Nikolenko S. I., Khrabrov K., Aliper A., Zhavoronkov A. druGAN: An Advanced Generative Adversarial Autoencoder Model for de Novo Generation of New Molecules with Desired Molecular Properties in Silico // Molecular Pharmaceutics. 2017. Vol. 14. No. 9. P. 3098-3104. doi
• Chapter Nikolenko S. I. ARTM vs. LDA: an SVD Extension Case Study, in: Supplementary Proceedings of the 5th International Conference on Analysis of Images, Social Networks and Texts (AIST-SUP 2016), Yekaterinburg, Russia, April 7-9, 2016. / Ed. by D. I. Ignatov. Vol. 1710. Aachen : CEUR Workshop Proceedings, 2016. P. 276-282.
• Chapter Kogan K., Menikkumbura D., Petri G., Noh Y., Nikolenko S. I., Eugster P. BASEL (Buffer mAnagement SpEcification Language), in: ANCS 2016 - Proceedings of the 2016 Symposium on Architectures for Networking and Communications Systems. Santa Clara, CA, USA - March 17 - 18, 2016. NY : ACM, 2016. doi P. 69-76.
• Article Koltsova O., Koltsov S., Nikolenko S. I. Communities of co-commenting in the Russian LiveJournal and their topical coherence // Internet Research. 2016. Vol. 26. No. 3. P. 710-732. doi
• Chapter Tutubalina E., Nikolenko S. I. Constructing aspect-based sentiment lexicons with topic modeling, in: Supplementary Proceedings of the 5th International Conference on Analysis of Images, Social Networks and Texts (AIST-SUP 2016), Yekaterinburg, Russia, April 7-9, 2016. / Ed. by D. I. Ignatov. Vol. 1710. Aachen : CEUR Workshop Proceedings, 2016. P. 208-220. doi
• Chapter Zakhlebin I. V., Semenov A., Tolmach A., Nikolenko S. I. Detecting Opinion polarisation on Twitter by constructing pseudo-bimodal networks of mentions and retweets., in: Information Retrieval. 9th Russian Summer School, RuSSIR 2015, Saint Petersburg, Russia, August 24-28, 2015, Revised Selected Papers / Ed. by P. Braslavski, P. Markov, Y. Volkovich, D. I. Ignatov, S. Koltsov, O. Koltsova, P. M. Pardalos. Vol. 573. Switzerland : Springer, 2016. doi P. 169-178. doi
• Article Kogan K., Nikolenko S. I., Rottenstreich O., Culhane W., Eugster P. Exploiting Order Independence for Scalable and Expressive Packet Classification // IEEE/ACM Transactions on Networking. 2016. Vol. 24. No. 2. P. 1251-1264. doi
• Chapter Kogan K., Nikolenko S. I., Eugster P., Shalimov A., Rottenstreich O. FIB Efficiency in Distributed Platforms, in: 24th IEEE International Conference on Network Protocols (ICNP 2016). IEEE, 2016. (in press)
• Article Кольцов С. Н., Николенко С. И., Кольцова Е. Ю. Gibbs Sampler Optimization for Analysis of a Granulated Medium // Письма в Журнал технической физики. 2016. Т. 42. № 8. С. 837-839. doi
• Chapter Nikolenko S. I., Kogan K., Retvari G., Berczi-Kovacs E. R., Shalimov A. How to represent IPv6 forwarding tables on IPv4 or MPLS dataplanes, in: 2016 IEEE Conference on Computer Communications Workshops (INFOCOM WKSHPS). Atlanta : IEEE, 2016. P. 521-526. doi
• Article Kogan K., López-Ortiz A., Nikolenko S. I., Scalosub G., Segal M. Large profits or fast gains: A dilemma in maximizing throughput with applications to network processors // Journal of Network and Computer Applications. 2016. Vol. 74. No. October . P. 31-43. doi
• Chapter Chuprikov P., Nikolenko S. I., Kogan K. On demand elastic capacity planning for service auto-scaling, in: Proceedings of the 35th Annual IEEE International Conference on Computer Communications (INFOCOM 2016). Hong Cong : IEEE, 2016. P. 1-9. doi
• Article Kogan K., Lopez-Ortiz A., Nikolenko S. I., Alexander V. Sirotkin. Online Scheduling FIFO Policies with Admission and Push-Out // Theory of Computing Systems. 2016. Vol. 58. No. 2. P. 322-344. doi
• Article Ignatov D. I., Nikolenko S. I., Abaev T., Poelmans J. Online recommender system for radio station hosting based on information fusion and adaptive tag-aware profiling // Expert Systems with Applications. 2016. Vol. 55. P.  546-558. doi
• Chapter Ignatov D. I., Khachay M., Labunets V., Loukachevitch N., Nikolenko S. I., Panchenko A., Savchenko A., Vorontsov K. Preface, in: Supplementary Proceedings of the 5th International Conference on Analysis of Images, Social Networks and Texts (AIST-SUP 2016), Yekaterinburg, Russia, April 7-9, 2016. / Ed. by D. I. Ignatov. Vol. 1710. Aachen : CEUR Workshop Proceedings, 2016. P. V-VII.
• Chapter Semenov A., Zakhlebin I. V., Tolmach Alexander, Nikolenko S. I. Pseudo-Bimodal Community Detection in Twitter-Based Networks, in: 8th International Congress on Ultra Modern Telecommunications and Control Systems and Workshops (ICUMT). [б.и.], 2016.
• Chapter Sergei Koltcov, Nikolenko S. I., Olessia Koltsova, Vladimir Filippov, Svetlana Bodrunova. Stable Topic Modeling with Local Density Regularization, in: Internet Science, Proc. of 3d conf INSCI 2016, Lecture Notes in Computer Science series Vol. 9934. Switzerland : Springer, 2016. doi P. 176-188. doi
• Chapter Koltsov S., Nikolenko S. I., Koltsova O., Bodrunova S. Stable topic modeling for web science: Granulated LDA, in: WebSci 2016 - Proceedings of the 2016 ACM Web Science Conference. Elsevier, 2016. P. 342-343. doi
• Chapter Nikolenko S. I. Topic Quality Metrics Based on Distributed Word Representations, in: SIGIR '16 Proceedings of the 39th International ACM SIGIR conference on Research and Development in Information Retrieval. NY : ACM, 2016. P. 1029-1032. doi
• Book Semenov A., Natekin A., Nikolenko S. I., Upravitelev P., Trofimov M., Kharchenko M. Communications in Computer and Information Science, Vol. 542, Springer, 2015 Vol. 542: Analysis of Images, Social Networks and Texts. Fourth International Conference, AIST 2015. Springer, 2015. doi
• Chapter Semenov A., Natekin A., Nikolenko S. I., Upravitelev P., Trofimov M., Kharchenko M. Discerning Depression Propensity Among Participants of Suicide and Depression-Related Groups of Vk.com, in: Analysis of Images, Social Networks and Texts. 4th International Conference, AIST 2015, Yekaterinburg, Russia, April 9–11, 2015, Revised Selected Papers / Ed. by M. Y. Khachay, N. Konstantinova, A. Panchenko, D. I. Ignatov, V. Labunets. Vol. 542: Series: Communications in Computer and Information Science. Switzerland : Springer, 2015. Ch. 3. P. 24-35. doi
• Chapter Bodrunova S., Koltsova O., Koltsov S., Nikolenko S. I. Mapping Ethnic Discourse in the Russian Blogosphere of 2010s, in: XV апрельская международная научная конференция по проблемам развития экономики и общества: в 4-х книгах / Отв. ред.: Е. Г. Ясин. Кн. 3. М. : Издательский дом НИУ ВШЭ, 2015. P. 181-188.
• Chapter Chuprikov P., Nikolenko S. I., Kogan K. Priority Queueing with Multiple Packet Characteristics, in: Proceedings of the 34th Annual IEEE Conference on Computer Communications (INFOCOM 2015). Hong Cong : IEEE, 2015. P. 1418-1426. doi
• Article Leon-Zayas R., Novotny M., Podell S., Shepard C., Berkenpas E., Nikolenko S. I., Pevzner P., Lasken E., Bartlett D. Single Cells within the Puerto Rico Trench Suggest Hadal Adaptation of Microbial Lineages // Applied and Environmental Microbiology. 2015. Vol. 81. No. 24. P. 8265-8276. doi
• Chapter Kogan K., Lopez-Ortiz A., Nikolenko S. I., Scalosub G. Balancing Work and Size with Bounded Buffers, in: Proceedings of the 2014 Sixth International Conference on Communication Systems and Networks (COMSNETS 2014). Bangalore : IEEE, 2014. P. 1-8.
• Preprint Ignatov D. I., Nikolenko S. I., Abaev T., Poelmans J. Improving Quality Of Service For Radio Station Hosting: An Online Recommender System Based On Information Fusion / NRU Higher School of Economics. Series MAN "Management". 2014. No. 31.
• Chapter Koltsov S., Koltsova O., Nikolenko S. I. Latent Dirichlet Allocation: Stability and Applications to Studies of User-Generated content, in: Proceedings of WebSci '14 ACM Web Science Conference, Bloomington, IN, USA — June 23 - 26, 2014. NY : ACM, 2014. P. 161-165.
• Chapter Nikolenko S. I., Koltsov S., Koltsova O. Measuring Topic Quality in Latent Dirichlet Allocation, in: Proceedings of the Philosophy, Mathematics, Linguistics: Aspects of Interaction 2014 Conference. St. Petersburg : The Euler International Mathematical Institute, 2014. P. 149-157.
• Chapter Ignatov D. I., Nikolenko S. I., Abaev T., Konstantinova N. Online Recommender System for Radio Station Hosting: Experimental Results Revisited, in: Proceedings of The 2014 IEEE/WIC/ACM International Joint Conference on Web Intelligence and Intelligent Agent Technology, WI-IAT 2014, 11-14 August 2014 Warsaw, Poland / Ed. by D. Slezak, H. S. Nguyen, M. Reformat, S. J. Eugene. Los Alamitos, Washington, Tokyo : IEEE Computer Society, 2014. P. 229-236.
• Chapter Nikolenko S. I., Kogan K., Rottenstreich O., Culhane W., Eugster P. SAX-PAC (Scalable And eXpressive PAcket Classification), in: Proceedings of the 2014 ACM conference on SIGCOMM. NY : ACM Press, 2014. P. 15-26.
• Chapter Nikolenko S. I., Kogan K., Eugster P., Sirotkin A. Shared Memory Buffer Management for Heterogeneous Packet Processing, in: Proceedings of the IEEE 34th International Conference on Distributed Computing Systems (ICDCS 2014). NY : IEEE, 2014. P. 471-480.
• Chapter Nikolenko S. I. Single and Multiple Buffer Processing, in: Encyclopedia of Algorithms. NY : Springer, 2014. P. 1-9.
• Article Alexandrov T., Chernyavsky I., Becker M., von Eggeling F., Nikolenko S. I. Analysis and interpretation of imaging mass spectrometry data by clustering mass-to-charge images according to their spatial similarity // Analytical Chemistry. 2013. Vol. 85. No. 23. P. 11189-11195. doi
• Article Nikolenko S. I., Korobeynikov A. I., Alekseyev M. A. BayesHammer: Bayesian clustering for error correction in single-cell sequencing // BMC Genomics. 2013. Vol. 14. No. Suppl. 1. P. S7.
• Preprint Koltsova O., Koltsov S., Nikolenko S. I. Comment-Based Discussion Communities In The Russian LiveJournal And Their Topical Coherence / NRU Higher School of Economics. Series SOC "Sociology". 2013. No. WP BRP 33/SOC/2013.
• Chapter Kogan K., Nikolenko S. I., Keshav S., Lopez-Ortiz A. Efficient Demand Assignment in Multi-Connected Microgrids, in: Proceedings of the Fourth International Conference on Future Energy Systems (e-Energy 2013). NY : ACM Press, 2013. P. 277-278.
• Chapter Kogan K., Nikolenko S. I., Keshav S., Lopez-Ortiz A. Efficient Demand Assignment in Multi-Connected Microgrids with a Shared Central Grid, in: Proceedings of the Third IFIP Conference on Sustainable Internet and ICT for Sustainability 2013 (SustainIT 2013). NY : IEEE Computer Society, 2013. (in press)
• Chapter Bodrunova S., Nikolenko S. I., Koltsova O., Koltsov S., Шиморина А. Interval Semi-Supervised LDA: Classifying Needles in a Haystack, in: Proceedings of the 12th Mexican International Conference on Artificial Intelligence (MICAI 2013) Part I: Advances in Artificial Intelligence and Its Applications. Berlin : Springer, 2013. P. 265-274.
• Chapter Bodrunova S., Koltsov S., Koltsova O., Nikolenko S. I., Shimorina A. Interval Semi-supervised LDA: Classifying Needles in a Haystack, in: Proceedings of the 12th Mexican International Conference on Artificial Intelligence (MICAI 2013) Part I: Advances in Artificial Intelligence and Its Applications. Berlin : Springer, 2013. P. 265-274.
• Chapter Kogan K., Nikolenko S. I., Lopez-Ortiz A., Sirotkin A. Multi-Queued Network Processors for Packets with Heterogeneous Processing Requirements, in: Proceedings of the Fifth International Conference on Communication Systems and Networks (COMSNETS 2013). Bangalore : IEEE Computer Society, 2013. P. 1-10.
• Chapter Leksin V., Nikolenko S. I. Semi-supervised Tag Extraction in a Web Recommender System, in: Proceedings of the 6th International Conference on Similarity Search and Applications (SISAP 2013), Lecture Notes in Computer Science Vol. 8199. Berlin, Heidelberg : Springer, 2013. P. 206-212.
• Chapter Kogan K., Nikolenko S. I., Culhane W., Eugster P., Ruan E. Towards Efficient Implementation of Packet Classifiers in SDN/OpenFlow, in: Proceedings of the Second ACM SIGCOMM workshop on Hot topics in Software Defined Networking (HotSDN-2013). NY : ACM Press, 2013. P. 153-154.
• Chapter Fishkov A., Nikolenko S. I. A New Click Model for Relevance Prediction in Web Search, in: EEML 2012 – Experimental Economics in Machine Learning / Ed. by R. Tagiew, D. I. Ignatov, A. Neznanov, J. Poelmans. Leuven : Katholieke Universiteit Leuven, 2012. P. 45-54. (in press)
• Chapter Zaharchuk V. V., Ignatov D. I., Konstantinov A. V., Nikolenko S. I. A New Recommender System for the Interactive Radionetwork FMHost, in: EEML 2012 – Experimental Economics in Machine Learning / Ed. by R. Tagiew, D. I. Ignatov, A. Neznanov, J. Poelmans. Leuven : Katholieke Universiteit Leuven, 2012. P. 72-85.
• Chapter Kogan K., Lopez-Ortiz A., Nikolenko S. I., Sirotkin A. V. A Taxonomy of Semi-FIFO Policies, in: Proceedings of the 31st IEEE International Performance Computing and Communications Conference. Austin : IEEE, 2012. P. 295-304.
• Chapter Chernyavsky I., Alexandrov T., Maass P., Nikolenko S. I. A Two-Step Soft Segmentation Procedure for MALDI Imaging Mass Spectrometry Data, in: Proceedings of the 18th German Conference in Bioinformatics Issue 26. Saarbrücken : Dagstuhl Publishing, 2012. P. 39-48.
• Article Grigoriev D., Nikolenko S. I. Continuous Hard-to-Invert Functions and Biometric Authentication // Groups, Complexity, Cryptology. 2012. Vol. 4. No. 1. P. 19-32.
• Chapter Kogan K., Lopez-Ortiz A., Nikolenko S. I., Sirotkin A., Tugaryov D. FIFO Queueing Policies for Packets with Heterogeneous Processing, in: Design and Analysis of Algorithms: Proceedings of the 1st Mediterranean Conference on Algorithms. Berlin : Springer, 2012. P. 248-260.
• Article Hirsch E. A., Melanich O., Nikolenko S. I. Feebly secure cryptographic primitives // Journal of Mathematical Sciences. 2012. Vol. 399. P. 32-64.
• Chapter Nikolenko S. I., Mints G. E. History of the Leningrad (St. Petersburg) School of Constructive Mathematics and Proof Theory, in: Logic in Central and Eastern Europe: History, Science, and Discourse. Lanham : University Press of America, 2012. P. 380-387.
• Chapter Ignatov D. I., Konstantinov A. V., Nikolenko S. I., Poelmans J., Zaharchuk V. V. Online Recommender System for Radio Station Hosting, in: Perspectives in Business Informatics Research. 11th International Conference, BIR 2012, Nizhny Novgorod, Russia, September 2012 Proceedings / Ed. by N. Aseeva, E. Babkin, O. Kozyrev. Issue 128. Berlin, Heidelberg : Springer, 2012. P. 1-12.
• Chapter Nikolenko S. I. Provably Secure Cryptographic Constructions, in: Cryptography and Security in Computing. NY : InTech, 2012. P. 3-22.
• Article Николенко С. И., Фишков А. А. SCM: новая вероятностная модель поведения пользователей интернет-поиска // Информатика и автоматизация (Труды СПИИРАН). 2012. Т. 20. С. 72-100.
• Article Bankevich A., Nurk S., Antipov D., Gurevich A. A., Dvorkin M., Kulikov A. S., Lesin V. M., Nikolenko S. I., Pham S., Prjibelski A. D., Pyshkin A. V., Sirotkin A., Vyahhi N., Tesler G., Alekseyev M. A., Pevzner P. A. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing // Journal of Computational Biology. 2012. Vol. 19. No. 5. P. 455-477.
• Chapter Nikolenko S. I. The Markov School in the 21st Century, in: Logic in Central and Eastern Europe: History, Science, and Discourse. Lanham : University Press of America, 2012. P. 388-427.
• Article Николенко С. И., Сердюк Д. В., Сироткин А. В. Байесовские рейтинг-системы с учётом дополнительной информации о результатах // Информатика и автоматизация (Труды СПИИРАН). 2012. Т. 22. С. 189-204.
• Article Чернявский И. И., Александров Ф., Николенко С. И. Метод сегментации результатов MALDI-спектрометрии на основе графических вероятностных моделей // Информатика и автоматизация (Труды СПИИРАН). 2012. Т. 21. С. 120-142.
• Chapter Захарчук В. В., Игнатов Д. И., Константинов А. В., Николенко С. И. Модель рекомендательной системы для интерактивного радиосервиса FMhost // В кн.: Интеллектуализация обработки информации ИОИ: 9-я международная конференция. Черногория, г. Будва, 2012 г.: сборник докладов / Отв. ред.: К. В. Воронцов. М. : Торус Пресс, 2012. С. 617-620.
• Article Николенко С. И., Фишков А. А. Обзор моделей поведения пользователей для задачи ранжирования результатов поиска // Информатика и автоматизация (Труды СПИИРАН). 2012. Т. 22. С. 139-175.