• A
  • A
  • A
  • ABC
  • ABC
  • ABC
  • А
  • А
  • А
  • А
  • А
Regular version of the site
Of all publications in the section: 627
Sort:
by name
by year
Article
Kouprianov A. V., Fedotova A. A. Metaleptea: the newsletter of the Othoptersits' society (Соединенные Штаты Америки). 2017. Vol. 37. No. 1. P. 33-36.

Sir Boris Uvarov (1886 [sic]–1970), FRS, KCMG, a Russian-born British entomologist was during his lifetime a recognised leader of the discipline of Orthopterology. He is widely known for his numerous descriptions of new taxa as well as for his locust phase theory which was important for rationalising locust control. Until recently, his date of birth remained uncertain, for at different times it was reported as November 5, 1888 or 1889. Archival research reveals the true date of his birth (October 22 / November 3, 1886) and allows to correct some oher key facts and dates on his early biography.

Added: Dec 22, 2017
Article
Butorina A., Prokofiev A., Nazarova M. et al. Neuroimage. 2014. P. 181-191.

We tested whether mirror visual feedback (MVF) from a moving hand induced high gamma oscillation (HGO) response in the hemisphere contralateral to the mirror and ipsilateral to the self-paced movement. MEG was recorded in 14 subjects under three conditions: bilateral synchronous movements of both index fingers (BILATERAL), movements of the right hand index fingerwhile observing the immobile left index finger (NOMIRROR), and movements of the right hand index fingerwhile observing its mirror reflection (MIRROR). The right hemispheric spatiospectral regions of interests (ROIs) in the sensor space, sensitive to bilateral movements, were found by statistical comparison of the BILATERAL spectral responses to baseline. For these ROIs, the post-movement HGO responses were compared between the MIRROR and NOMIRROR conditions. We found that MVF from the moving hand, similarly to the real movements of the opposite hand, induced HGOs (55–85 Hz) in the sensorimotor cortex. This MVF effect was frequency-specific and did not spread to oscillations in other frequency bands. This is the first study demonstrating movement-related HGO induced by MVF from the moving hand in the absence of proprioceptive feedback signaling. Our findings support the hypothesis that MVF can trigger the feedback-based control processes specifically associated with perception of one's own movements.

Added: Oct 23, 2014
Article
Пелиновский Е. Н., Ошмарина О. Е., Костенко И. С. и др. Izvestiya, Atmospheric and Oceanic Physics. 2018. Т. 54. № 1. С. 1-9.

Observation data on the September 5, 1971, earthquake that occurred near the Moneron Island (Sakhalin) have been analyzed and a numerical simulation of the tsunami induced by this earthquake is conducted. The tsunami source identified in this study indicates that the observational data are in good agreement with the results of calculations performed on the basis of shallow-water equations

Added: Oct 21, 2018
Article
Shevnina E., Silaev A. M. Geoscientific Model Development. 2019. Vol. 12. No. 7. P. 2767-2780.

The question of the environmental risks of social and economic infrastructure has recently become apparent due to an increase in the number of extreme weather events. Extreme runoff events include floods and droughts. In water engineering, extreme runoff is described in terms of probability and uses methods of frequency analysis to evaluate an exceedance probability curve (EPC) for runoff. It is assumed that historical observations of runoff are representative of the future; however, trends in the observed time series show doubt in this assumption. The paper describes a probabilistic hydrological MARCSHYDRO (the MARkov Chain System) model that can be applied to predict future runoff extremes. The MARCSHYDRO model simulates statistical estimators of multi-year runoff in order to perform future projections in a probabilistic form. Projected statistics of the meteorological variables available in climate scenarios force the model. This study introduces the new model’s core version and provides a user guide together with an example of the model set-up in a single case study. In this case study, the model simulates the projected EPCs of annual runoff under three climate scenarios. The scope of applicability and limitations of the model’s core version 0.2 are discussed.

Added: Sep 16, 2019
Article
Pelinovsky E., Choi B., Kim K. et al. Natural Hazards and Earth System Sciences. 2015. Vol. 15. No. 4. P. 747-755.
The tsunami generated on 12 July 1993 by the Hokkaido–Nansei–Oki earthquake (Mw D7.8) brought about a maximum wave run-up of 31.7 m, the highest recorded in Japan during the 20th century, near the Monai Valley on the west coast of Okushiri Island (Hokkaido Tsunami Survey Group, 1993). To reproduce the extreme run-up height, the three-dimensional non-hydrostatic model (Flow Science, 2012), referred to here as the NH-model, has been locally applied with open boundary conditions supplied in an offline manner by the three-dimensional hydrostatic model (Ribeiro et al., 2011), referred to here as the H-model. The area of the H-model is sufficiently large to cover the entire fault region with one-way nested multiple domains. For the initial water deformation, Okada’s fault model (1985) using the sub-fault parameters is applied. Three NH-model experiments have been performed, namely without islands, with one island and with two islands. The experiments with one island and with two islands give rise to values close to the observation with maximum runup heights of about 32.3 and 30.8 m, respectively, while the experiment without islands gives rise to about 25.2 m. The diffraction of the tsunami wave primarily by Muen Island, located in the south, and the southward topographic guiding of the tsunami run-up at the coast are, as in the laboratory simulation (Yoneyama et al., 2002), found to result in the extreme run-up height near Monai Valley. The presence of Hira Island enhances the diffraction of tsunami waves but its contribution to the extreme run-up height is marginal.
Added: Aug 4, 2015
Article
Karachurina L. B., Mkrtchyan N. V. Regional Research of Russia. 2016. Vol. 6. No. 4. P. 332-343.

The migration balance of urban municipal areas (hereinafter, okrugs — Russ.) and municipal dis¬tricts in Russia in 2012-2014 is analyzed from the standpoint of its impact on the concentration and decon-centration of the population. The paper reviews the distribution of urban okrugs and municipal districts by population density and the current ratio of sparsely and densely populated areas across the country. Calcula¬tions show that the conditions in Russia today contribute to concentration of the population and, hence, the polarization of space between densely populated major cities and deserted poorly developed areas. Unlike in many European countries and the United States, where concentration and deconcentration processes have been alternating for decades, concentration of the population is an ongoing process in Russia. Two directions of migration are analyzed: (1) from the intraregional periphery to regional centers: the farther from the center, the more intense the outflow; (2) from low-populated municipalities to densely populated territorial units, primarily, large cities. The contributions of individual migration flows (intraregional, interregional, and international) to the concentration and deconcentration of the population are evaluated.

Added: Dec 8, 2016
Article
Kladova O. A., Bazlekowa-Karaban M., Baconnais S. et al. DNA Repair. 2018. Vol. 64. P. 10-25.

The base excision repair (BER) pathway consists of sequential action of DNA glycosylase and apurinic/apyrimidinic (AP) endonuclease necessary to remove a damaged base and generate a single-strand break in duplex DNA. Human multifunctional AP endonuclease 1 (APE1, a.k.a. APEX1, HAP-1, or Ref-1) plays essential roles in BER by acting downstream of DNA glycosylases to incise a DNA duplex at AP sites and remove 3′-blocking sugar moieties at DNA strand breaks. Human 8-oxoguanine-DNA glycosylase (OGG1), methyl-CpG-binding domain 4 (MBD4, a.k.a. MED1), and alkyl-N-purine-DNA glycosylase (ANPG, a.k.a. Aag or MPG) excise a variety of damaged bases from DNA. Here we demonstrated that the redox-deficient truncated APE1 protein lacking the first N-terminal 61 amino acid residues (APE1-NΔ61) cannot stimulate DNA glycosylase activities of OGG1, MBD4, and ANPG on duplex DNA substrates. Electron microscopy imaging of APE1–DNA complexes revealed oligomerization of APE1 along the DNA duplex and APE1-mediated DNA bridging followed by DNA aggregation. APE1 polymerizes on both undamaged and damaged DNA in cooperative mode. Association of APE1 with undamaged DNA may enable scanning for damage; however, this event reduces effective concentration of the enzyme and subsequently decreases APE1-catalyzed cleavage rates on long DNA substrates. We propose that APE1 oligomers on DNA induce helix distortions thereby enhancing molecular recognition of DNA lesions by DNA glycosylases via a conformational proofreading/selection mechanism. Thus, APE1-mediated structural deformations of the DNA helix stabilize the enzyme–substrate complex and promote dissociation of human DNA glycosylases from the AP site with a subsequent increase in their turnover rate.

Significance Statement: The major human apurinic/apyrimidinic (AP) endonuclease, APE1, stimulates DNA glycosylases by increasing their turnover rate on duplex DNA substrates. At present, the mechanism of the stimulation remains unclear. We report that the redox domain of APE1 is necessary for the active mode of stimulation of DNA glycosylases. Electron microscopy revealed that full-length APE1 oligomerizes on DNA possibly via cooperative binding to DNA. Consequently, APE1 shows DNA length dependence with preferential repair of short DNA duplexes. We propose that APE1-catalyzed oligomerization along DNA induces helix distortions, which in turn enable conformational selection and stimulation of DNA glycosylases. This new biochemical property of APE1 sheds light on the mechanism of redox function and its role in DNA repair.

Added: Feb 21, 2018
Article
Ponomarenko E., Poverennaya E., Ilgisonis E. et al. International Journal of Analytical Chemistry. 2016. P. 1-6.

This work discusses bioinformatics and experimental approaches to explore the human proteome, a constellation of proteins expressed in different tissues and organs. As the human proteome is not a static entity, it seems necessary to estimate the number of different protein species (proteoforms) and measure the number of copies of the same protein in a specific tissue. Here, meta-analysis of neXtProt knowledge base is proposed for theoretical prediction of the number of different proteoforms that arise from alternative splicing (AS), single amino acid polymorphisms (SAPs), and posttranslational modifications (PTMs). Three possible cases are considered: (1) PTMs and SAPs appear exclusively in the canonical sequences of proteins, but not in splice variants; (2) PTMs and SAPs can occur in both proteins encoded by canonical sequences and in splice variants; (3) all modification types (AS, SAP, and PTM) occur as independent events. Experimental validation of proteoforms is limited by the analytical sensitivity of proteomic technology. A bell-shaped distribution histogram was generated for proteins encoded by a single chromosome, with the estimation of copy numbers in plasma, liver, and HepG2 cell line. The proposed metabioinformatics approaches can be used for estimation of the number of different proteoforms for any group of protein-coding genes.

Added: Mar 14, 2018
Article
Gordin V. A., Bykov P. L., Tarasova L. et al. Russian Meteorology and Hydrology. 2017. No. 6. P. 403-414.

The archives of measurements at a network of stations of Roshydromet stocks of available water capacity and satellite measurements of relative soil moisture topsoil according with the instrument ASCAT (MetOp satellites) were used. The estimation of the statistical structure of the fields of available water capacity in the upper 10- and 20-cm soil layers, correlations were found between the data of remote sensing (RS) data and agrometeorological stations. Developed procedure for automated pre-control ground-based measurements. The algorithm is statistically optimal transform of remote sensing data in estimating the amount of moisture in the upper soil layer.

Added: Dec 15, 2016
Article
Kychkin A., Volodin V., Sharonov A. et al. Neftyanoe Khozyaistvo - Oil Industry. 2016. No. 11. P. 128-132.

The efficiency of the hydrocarbon deposits development is determined by recovery factor of oil or gas and the amount of material costs for the development of mineral resources and their exploitation - profitability of the project. Today, science and technology allows to develop economically feasible deposits with hard to recover reserves by applying methods of stimulation to the well, one of the most popular is the construction of wells with horizontal profiles. Drilling of directional and horizontal wells require the use of special drilling equipment - rotary-steerable systems (RSS) to control the trajectory of the wellbore in real time. Today the market offers a large number of equipment for directional drilling the main is a foreign proceeding. Work with such systems need to attract highly qualified personnel, and often foreign experts. In this regard, the development of a remote monitoring and control system of the trajectory of the wellbore hardware and software while drilling wells using RSS is an actual scientific and practical task. The paper presents the set-theoretic model of the synthesis of the structure of remote monitoring and control system of the trajectory of the wellbore hardware and software while drilling wells using the rotary steerable systems. Approach to systematize the creation of software and hardware systems structure for monitoring and control provides qualitative information and algorithmic environment that meets all the requirements of modern standards. On the basis of the proposed model the structure of the complex is designed, which includes a set of submersible units, executive and implementing measurement and control system, communication system, scheduling system. The structure of hardware and software has a modular principle of organization, it involves building up features, including the introduction of additional telemetry parameters, has the mainstream and alternative information channels, advanced power system components, including redundant power supplies.

Added: Nov 24, 2018
Article
Vukovic D., Petrovic M., Radovanovic M. et al. Open Geosciences. 2017. Vol. 9. No. 1. P. 442-456.

The research aimed at testing the combination of GAM/M-GAM models (Geosite Assessment Model/Modified Geosite Assessment Model) on selected geoheritage sites (geosites) of great scientific significance and geotourism potential. Testing was done on eight sites in the City of Belgrade (Serbian capital), an area which has significant potential for geotourism development in typical urban conditions. For this purpose, an assessment scale was used to highlight differences and similarities between main and additional values of the observed geosites. The modification of the original GAM model is based on the inclusion of visitors’ opinions regarding the importance of indicators in the assessment process. The assessment was done by using both GAM/M-GAM and its results were analyzed and compared afterwards. The analysis has successfully identified locations and features of geosites that require action for maintaining or increasing their overall value and function. Moreover, the principal aim of the paper was to analyze the relevance of each sub-indicator for the assessment process by introducing the importance factor in the modified model. The authors were able to point out those values of principal importance for geosite visitors, as well as to attach a different relevance to sub-indicators, which can influence the position of the geosites in the GAM/M-GAM matrices.

Added: Dec 23, 2017
Article
Holland R., Brindley L., Shtyrov Y. et al. Neuropsychologia. 2012. Vol. 50. No. 14. P. 3713-3720.

especially impaired on regular past-tense forms like played, whether the task requires production, comprehension or even the judgement that "play" and "played" sound different. Within a dual-mechanism account of inflectional morphology, these deficits reflect disruption to the rule-based process that adds (or strips) the suffix -ed to regular verb stems; but the fact that the patients are also impaired at detecting the difference between word pairs like "tray" and "trade" (the latter being a phonological but not a morphological twin to "played") suggests an important role for phonological characteristics of the regular past tense. The present study examined MEG brain responses in healthy participants evoked by spoken regular past-tense forms and phonological twin words (plus twin pseudowords and a non-speech control) presented in a passive oddball paradigm. Deviant forms (played, trade, kwade/kwayed) relative to their standards (play, tray, kway) elicited a pronounced neuromagnetic response at approximately 130 ms after the onset of the affix; this response was maximal at sensors over temporal areas of both hemispheres but stronger on the left, especially for played and kwayed. Relative to the same standards, a different set of deviants ending in /t/--plate, trait and kwate--produced stronger difference responses especially over the right hemisphere. Results are discussed with regard to dual- and single-mechanism theories of past tense processing and the need to consider neurobiological evidence in attempts to understand inflectional morphology.

Added: Oct 23, 2014
Article
Григоренко Е. Е., Zelenyi L., Dibraccio G. et al. Geophysical Research Letters. 2019. No. 46. P. 6214-6222.

Current sheets (CSs) play a crucial role in the storage and conversion of magnetic energy in planetary magnetotails. Using high‐resolution magnetic field data from MAVEN spacecraft, we report the existence of super thin current sheets (STCSs) in the Martian magnetotail. The typical half‐thickness of the STCSs is ~5 km, and it is much less than the gyroradius of thermal protons (ρp). The STCSs are embedded into a thicker sheet with L ≥ ρp forming a multiscale current configuration. The formation of STCS does not depend on ion composition, but it is controlled by the small value of the normal component of the magnetic field at the neutral plane (Bn). A number of the observed multiscale CSs are located in the parametric map close to the tearing‐unstable domain, and thus, the inner STCS can provide an additional free energy to excite ion tearing mode in the Martian magnetotail.

Added: Jan 29, 2020
Article
Kuznetsova K., Trufanov P., Moysa A. et al. Rapid Communications in Mass Spectrometry. 2016. Vol. 30. No. 11. P. 1323-1331.

One of the problems in proteogenomic research aimed at identification of variant peptides is the presence of peptides with amino acid isomers of different origin in the analyzed samples. Among the most challenging examples are peptides with threonine and isothreonine (homoserine) in their sequences. Indeed, the latter residue may appear in vitro as a methionine substitution during sample preparation for shotgun proteome analysis. Yet, this substitution of Met to isoThr is not encoded genetically and should be unambiguously distinguished from, e.g., point mutations in proteins that result in Met conversion to Thr.

METHODS:

In this work we compared tandem mass (MS/MS) spectra produced by an Orbitrap mass spectrometer of Thr- and isoThr-containing tryptic peptides and found a distinctive feature in their collisionally activated fragmentation patterns.

RESULTS:

Up to 84% of MS/MS spectra for peptides containing isoThr residues have been positively specified. We also studied the differences in retention times for peptides containing Thr isoforms that can be further used for their distinction.

CONCLUSIONS:

Threonine can be distinguished from isothreonine by its retention time and HCD fragmentation pattern, specifically relative intensity of the bn - product ion, which can be further used in proteomic research

Added: Mar 14, 2018
Article
Alyushin A. Axiomathes. 2010. Vol. 20. No. 4. P. 439-460.

My goal is to conceive how the reality would look like for hypothetical creatures that supposedly perceive on time scales much faster or much slower that of us humans. To attain the goal, I propose modelling in two steps. At step we have to single out a uni“ed parameter that sets time scale of perception. Changing substantially the value of the parameter would mean changing scale. argue that the required parameter is duration of discrete perceptive frames, snapshots, whose sequencing constitutes perceptive process. I show that different standard durations of perceptive frames is the ground for differences in perceptive time scales of various animals. Abnormally changed duration of perceptive frames is the cause of the effect of distorted subjective time observed by humans under some conditions. Now comes step two of the modelling. By inserting some arbitrary duration of a perceptive frame, we set a hypothetical scale and thus emulate viewpoint for virtual observation of the reality in a wider or narrower angle embracing events in time. Like changing lenses of a microscope, viewing reality different temporal scales makes certain features of reality manifested, others veiled. These are, in particular, features of life. If we observe an object in an inappropriate interval, we may not notice the very essence of a process it is undergoing.

Added: Jan 20, 2013
Article
Nechaev S., Tamm M., Valba O. V. et al. Journal of Statistical Mechanics: Theory and Experiment. 2014. No. 12. P. 12004.

In this paper, we investigate analytical properties of planar matching on a line in the disordered Bernoulli model. This model is characterized by a topological phase transition, yielding the complete planar matching solutions only above a critical density threshold. We develop a combinatorial procedure of arcs expansion that explicitly takes into account the contribution of short arcs, and allows to obtain an accurate analytical estimation of the critical value by reducing the global constrained problem to a set of local ones. As an application to the physics of the RNA secondary structures, we suggest generalized models that incorporate a one-to-one correspondence between the contact matrix and the nucleotide sequence, thus giving sense to the notion of effective non-integer alphabets

Added: Oct 23, 2014
Article
Kabachnick P., Grabowska M., Regulska J. et al. Gender, Place and Culture: A Journal of Feminist Geography. 2013. Vol. 20. No. 6. P. 773-793.

Over 200,000 people became internally displaced after several violent conflicts in the early 1990s in Georgia. For many internally displaced persons (IDPs), gender relations have been transformed significantly. This translates to many women taking on the role of breadwinner for their family, which often is accompanied by the process of demasculinization for men. In this article, we examine the construction of masculinities and analyze the gendered processes of displacement and living in post-displacement for Georgian IDPs from Abkhazia. We identify the formation of ‘traumatic masculinities’ as a result of the threats to, though not usurpation of, hegemonic masculinities. Drawing on interviews, we highlight how IDPs conceptualize gender norms and masculinities in Georgia. Despite the disruptions that displacement has brought about, with the subsequent challenges to IDPs’ ideal masculine roles, the discourses of hegemonic masculinities still predominate amongst IDPs. We further illustrate this point by identifying two separate gendered discourses of legitimization that attempt to reconcile hegemonic masculinities with the current contexts and circumstances that IDPs face. These new traumatic masculinities do coexist with hegemonic masculinities, although the latter are reformed and redefined as a result of the new contexts and new places within which they are performed.

Added: Mar 21, 2013
Article
Зайцев А., Бабейко А., Куркин А. А. и др. Izvestiya, Atmospheric and Oceanic Physics. 2019. Т. 55. № 5. С. 462-469.

Tsunami forecast possibilities for areas with a small base of historical tsunamis have been discussed using the Probabilistic Tsunami Hazard Assessment (PTHA) method, which is based on a statistical analysis of a sufficiently large number of real and predictive earthquakes with a subsequent calculation of possible tsunami waves. This method has been used for a long-term tsunami hazard assessment on the Mediterranean coast of Egypt. The predicted wave heights have been shown to vary along the coastline due to the inhomogeneity of the coastal topography and specific features of the tsunami radiation pattern in the sea. The predicted wave heights for 1000 years vary in the range between 0.8 and 3.4 m.

Added: Oct 30, 2019
Article
Pelinovsky E., Didenkulova I. Pure and Applied Geophysics. 2018. Vol. 175. No. 4. P. 1387-1391.

We solve analytically a nonlinear problem of shallow water theory for the tsunami wave run-up on a vertical wall in tidal environment. Shown that the tide can be considered static in the process of tsunami wave run-up. In this approximation, it is possible to obtain the exact solution for the run-up height as a function of the incident wave height. This allows us to investigate the tide influence on the run-up characteristics.

Added: Oct 21, 2018
Article
Ylinen S., Nora A., Leminen A. et al. Cerebral Cortex. 2014. Vol. doi: 10.1093/cercor/bht351. P. 1-11.

Speech production, both overt and covert, down-regulates the activation of auditory cortex. This is thought to be due to forward prediction of the sensory consequences of speech, contributing to a feedback control mechanism for speech production. Critically, however, these regulatory effects should be specific to speech content to enable accurate speech monitoring. To determine the extent to which such forward prediction is content-specific, we recorded the brain's neuromagnetic responses to heard multisyllabic pseudowords during covert rehearsal in working memory, contrasted with a control task. The cortical auditory processing of target syllables was significantly suppressed during rehearsal compared with control, but only when they matched the rehearsed items. This critical specificity to speech content enables accurate speech monitoring by forward prediction, as proposed by current models of speech production. The one-to-one phonological motor-to-auditory mappings also appear to serve the maintenance of information in phonological working memory. Further findings of right-hemispheric suppression in the case of whole-item matches and left-hemispheric enhancement for last-syllable mismatches suggest that speech production is monitored by 2 auditory-motor circuits operating on different timescales: Finer grain in the left versus coarser grain in the right hemisphere. Taken together, our findings provide hemisphere-specific evidence of the interface between inner and heard speech.

Added: Oct 23, 2014
Article
MacGregor L. J., Difrancesco S., Pulvermuller F. et al. Brain Topography. 2015. Vol. 28. No. 2. P. 279-291.

Effects of intensive language action therapy (ILAT) on automatic language processing were assessed using Magnetoencephalography (MEG). Auditory magnetic mismatch negativity (MMNm) responses to words and pseudowords were recorded in twelve patients with chronic aphasia before and immediately after two weeks of ILAT. Following therapy, Patients showed significant clinical improvements of auditory comprehension as measured by the Token Test and in word retrieval and naming as measured by the Boston Naming Test. Neuromagnetic responses dissociated between meaningful words and meaningless word-like stimuli ultra-rapidly, approximately 50 ms after acoustic information first allowed for stimulus identification. Over treatment, there was a significant increase in the left-lateralisation of this early word-elicited activation, observed in perilesional fronto-temporal regions. No comparable change was seen for pseudowords. The results may reflect successful, therapy-induced, language restitution in the left hemisphere.

Added: Oct 23, 2014